YRC Public Data Repository - Protein Structure Prediction

Protein:	stm1
Organism:	Schizosaccharomyces pombe
Length:	271 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for stm1.

Description	E-value	Query Range	Subject Range
gi\|42552280, gi\|... - gi\|46122403\|ref\|XP_385755.1\| hypothetical protein FG05579.1 [Gibberella zeae PH-1], gi\|42552280\|gb\|E...	202.0	[0..4]	[269..1]
gi\|29150087, gi\|... - gi\|32422287\|ref\|XP_331587.1\| hypothetical protein [Neurospora crassa], gi\|29150087\|emb\|CAD79648.1\| c... gi\|85091923 - gi\|85091923\|ref\|XP_959139.1\| hypothetical protein NCU09195 [Neurospora crassa OR74A]	198.0	[0..4]	[268..1]
gi\|88183830, gi\|... - gi\|88183830\|gb\|EAQ91298.1\| hypothetical protein CHGG_03233 [Chaetomium globosum CBS 148.51], gi\|1162...	195.0	[0..4]	[269..1]
gi\|45199123, gi\|... - gi\|45199123\|ref\|NP_986152.1\| AFR605Cp [Ashbya gossypii ATCC 10895], gi\|44985263\|gb\|AAS53976.1\| AFR60... gi\|44985263 - gi\|44985263\|gb\|AAS53976.1\| AFR605Cp [Ashbya gossypii ATCC 10895]	194.0	[0..15]	[267..9]
gi\|39586914, gi\|... - gi\|39586914\|emb\|CAE62849.1\| Hypothetical protein CBG07028 [Caenorhabditis briggsae], gi\|187033681\|em... gi\|157753978 - gi\|157753978\|ref\|XP_001680701.1\| Hypothetical protein CBG07028 [Caenorhabditis briggsae AF16]	190.0	[0..4]	[268..26]
gi\|68478685, gi\|... - gi\|68478685\|ref\|XP_716611.1\| hypothetical protein CaO19.7370 [Candida albicans SC5314], gi\|46438283\|... orf19.7370 - orf19.7370 CGDID:CAL0004748 Assembly 19, Contig19-2513 (55307, 56302) CDS, translated using codon ta...	190.0	[0..3]	[270..1]
CE32969 - status:Confirmed UniProt:Q95XZ6 protein_id:AAK39328.2	190.0	[0..4]	[268..26]
gi\|15235292, gi\|... - pir\|\|T04894 hypothetical protein F18F4.200 - Arabidopsis thaliana, gi\|7268805\|emb\|CAB79010.1\| putat...	184.0	[0..12]	[270..1]
gi\|49650886 - gi\|49650886\|emb\|CAG77823.1\| YALI0F05060p [Yarrowia lipolytica] gi\|50555215, gi\|... - gi\|50555215\|ref\|XP_505016.1\| YALI0F05060p [Yarrowia lipolytica], gi\|49650886\|emb\|CAG77823.1\| unnamed...	181.0	[0..15]	[267..18]

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Predicted Domain #1

Region A:
Residues: [1-113]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVIAPSFDM ANILTELSSF LGALSLGCWV VLLIPQLLEN YKNQSGESIS DLFLIIWLIG  60
   61 DFFNVLGSIY GNVSSTVLVL SFYYIVSDST LLMQIYYYRW KAARRIASRE HEP

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	20.102373
Match:	PF04193.5
Description:	No description for PF04193.5 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [114-271]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LLQSRSLEEG LHAPIGKQQI WWDRLSTRQQ FGVMGCVVIV STIVGNLIIS SASSDKSDDD  60
   61 LNAWPFTAGC ISSVLYFCAR IPQIIKNHKA KSTEGLSIIF FVLASVGNTS YAFSILVFPA 120
  121 SDYLNYTYAN LPWILGAFST IFLDIYIFYQ FIKYRNHY

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	19.568636
Match:	PF04193.5
Description:	No description for PF04193.5 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits