YRC Public Data Repository - Protein Structure Prediction

Protein:	ste7
Organism:	Schizosaccharomyces pombe
Length:	569 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ste7.

Description	E-value	Query Range	Subject Range
TCNA_TRYCR - Sialidase OS=Trypanosoma cruzi GN=TCNA PE=2 SV=1	208.0	[0..4]	[538..580]
gi\|39592304, gi\|... - gi\|39592304\|emb\|CAE75525.1\| Hypothetical protein CBG23547 [Caenorhabditis briggsae], gi\|187020927\|em... gi\|157762282 - gi\|157762282\|ref\|XP_001673483.1\| Hypothetical protein CBG23547 [Caenorhabditis briggsae AF16]	191.0	[0..7]	[555..985]
gi\|33310026 - gi\|33310026\|gb\|AAQ03243.1\|AF414112_1 putative cell wall protein FLO11p [Candida albicans] gi\|68482880, gi\|... - gi\|68482880\|ref\|XP_714666.1\| putative cell wall adhesin [Candida albicans SC5314], gi\|46436253\|gb\|EA...	183.0	[0..2]	[548..141]
gi\|9695347 - gi\|9695347\|gb\|AAF97432.1\|U23947_9 VsaC1 [Mycoplasma pulmonis]	177.0	[0..28]	[537..6]
gi\|31540577 - gi\|31540577\|gb\|AAP48996.1\| cellulosomal scaffoldin anchoring protein C; ScaC [Acetivibrio cellulolyt...	168.0	[0..41]	[521..466]
gi\|15828996 - gi\|15828996\|ref\|NP_326356.1\| lipoprotein VSAC (fragment) [Mycoplasma pulmonis UAB CTIP] gi\|14089939, gi\|... - pir\|\|E90577 lipoprotein vsaC [imported] - Mycoplasma pulmonis (strain UAB CTIP) (fragment), gi\|14089...	167.0	[0..11]	[550..71]
SLP1_CLOTM, SLAP... - (Q06852) Cell surface glycoprotein 1 precursor (Outer layer protein B) (S-layer protein 1), Cell sur...	166.0	[0..5]	[549..816]
SLAP1_CLOTH - Cell surface glycoprotein 1 OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237 / NBRC 103400 ...	166.0	[0..5]	[549..1465]

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Predicted Domain #1

Region A:
Residues: [1-182]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFLEIILDSA TYSFDRVITG KICFETNAAT SPRSFQIQLR IKGYAVYHHG FLSSPSHKHP  60
   61 TTASASDSDE ATEIFTHSQP LPIPAGPSSK SHAIDFKFKF PSKSASSLPC SKSNDSMVNI 120
  121 CYMLKATISK RYAFLGSSQS AKAELIMVPP NLAGKPLSAN SSFGSSAKTF QLPEFDSVTP 180
  181 SA

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [183-294]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SLYKQPSFNS NPAPITTSSA THTSQFSTSS SSSVNSVHTP VMVPNPYFQY NSSMTAPSSS  60
   61 SSSVAPFVPR RQFSVSSASD PPQTPISMSP PIPPTPSQFS AFMYQNQQSY LS

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [295-488]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PQSHYENPLS ISSRPSPCCP STPSSAVTLS NGFDSQSNAY NNSGTGPPML YKFPQRSYTA  60
   61 PNTSFNSQRR MSSITSLPTA SFCPVKHGVS PPSLAGNQPS PLSSPLTNSN VSPSTICSPD 120
  121 NNVTFVNLAP GEKLTFKIEP NDLMDEEEVV ENSNMYSIPG KTVATTVCHS SSSSGDFSAL 180
  181 SCHRNLSFSE SLPT

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4

Region A:
Residues: [489-569]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AEDQVHNNHC AVSPSRRSSS NALYLATLPM GYERSNSVSY CSDSSLSSPL PDDNMLQDPH  60
   61 ALNMAYAKEF DVLINEVLQS L

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits