YRC Public Data Repository - Protein Structure Prediction

Protein:	SPAC3H1.05
Organism:	Schizosaccharomyces pombe
Length:	474 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC3H1.05.

Description	E-value	Query Range	Subject Range
gi\|46123047, gi\|... - gi\|46123047\|ref\|XP_386077.1\| hypothetical protein FG05901.1 [Gibberella zeae PH-1], gi\|42552703\|gb\|E...	445.0	[0..23]	[465..397]
gi\|12718381 - gi\|12718381\|emb\|CAC28689.1\| probable zinc metallo-protease [Neurospora crassa]	383.0	[0..31]	[465..1]
gi\|34482030 - gi\|34482030\|tpg\|DAA01789.1\| TPA: TPA_exp: CaaX prenyl protease [Emericella nidulans]	383.0	[0..31]	[465..1]
gi\|159125019 - gi\|159125019\|gb\|EDP50136.1\| CaaX prenyl protease Ste24 [Aspergillus fumigatus A1163] gi\|70994578, gi\|... - gi\|70994578\|ref\|XP_752066.1\| CaaX prenyl protease (Ste24), putative [Aspergillus fumigatus Af293], g...	382.0	[0..35]	[465..28]
gi\|114192813, gi... - gi\|115398061\|ref\|XP_001214622.1\| hypothetical protein ATEG_05444 [Aspergillus terreus NIH2624], gi\|1...	380.0	[0..31]	[465..1]
gi\|90298717, gi\|... - gi\|90298717\|gb\|EAS28348.1\| hypothetical protein CIMG_09552 [Coccidioides immitis RS], gi\|119175386\|r...	380.0	[0..31]	[465..1]
gi\|38109415, gi\|... - gi\|39978133\|ref\|XP_370454.1\| hypothetical protein MGG_06951 [Magnaporthe grisea 70-15], gb\|EAA55294....	380.0	[0..32]	[465..57]
gi\|83769181 - gi\|83769181\|dbj\|BAE59318.1\| unnamed protein product [Aspergillus oryzae] gi\|169773703 - gi\|169773703\|ref\|XP_001821320.1\| hypothetical protein [Aspergillus oryzae RIB40]	372.0	[0..31]	[465..1]
gi\|212537627, gi... - gi\|212537627\|ref\|XP_002148969.1\| CaaX prenyl protease Ste24 [Penicillium marneffei ATCC 18224], gi\|2... gi\|111380665 - gi\|111380665\|gb\|ABH09709.1\| STE24-like protein [Penicillium marneffei]	372.0	[0..33]	[465..5]
gi\|62288538 - gi\|62288538\|gb\|AAX78522.1\| CaaX prenyl protease [Paracoccidioides brasiliensis]	369.0	[0..31]	[465..1]

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Predicted Domain #1

Region A:
Residues: [1-219]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSPGLCFLKE ISVIQATPKP TTRSFANCCK MGILQHLMHI LDIPGFPWKI VIAGFSIGKY  60
   61 AWDLYLRRRQ VPYLLREKPP AILAEHVDEK KYQKALSYAR DKSWFSTIVS TFTLAVDLLI 120
  121 IKYDGLSYLW NITKFPWMDK LAASSSRFSL STSITHSCVF MFGLTLFSRL IQIPFNLYST 180
  181 FVIEEKYGFN KSTLKIFVID LLKELSLGGL LMSVVVGVF

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [220-474]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VKILTKFGDN FIMYAWGAYI VFGLILQTIA PSLIMPLFYK FTPLENGSLR TQIEELAASI  60
   61 NFPLKKLYVI DASRRSTHSN AFFYGLPWNK GIVLFDTLVK NHTEPELIAI LGHELGHWYM 120
  121 SHNLINTIID YGMSLFHLFL FAAFIRNNSL YTSFNFITEK PVIVGLLLFS DALGPLSSIL 180
  181 TFASNKVSRL CEYQADAFAK QLGYAKDLGD GLIRIHDDNL SPLEFDSLYT SYYHSHPILV 240
  241 DRLNAIDYTT LKKNN

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	73.619789
Match:	PF01435.9
Description:	No description for PF01435.9 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits