YRC Public Data Repository - Protein Structure Prediction

Protein:	srb6
Organism:	Schizosaccharomyces pombe
Length:	136 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for srb6.

Description	E-value	Query Range	Subject Range
gi\|67539878, gi\|... - gi\|67539878\|ref\|XP_663713.1\| hypothetical protein AN6109.2 [Aspergillus nidulans FGSC A4], ref\|XP_41...	119.0	[0..14]	[88..7]
gi\|90305819, gi\|... - gi\|90305819\|gb\|EAS35450.1\| hypothetical protein CIMG_00804 [Coccidioides immitis RS], gi\|119192854\|r...	104.0	[0..14]	[87..8]
gi\|114188220, gi... - gi\|115443088\|ref\|XP_001218351.1\| conserved hypothetical protein [Aspergillus terreus NIH2624], gi\|11...	79.0	[0..14]	[122..7]
gi\|50555678, gi\|... - gi\|50555678\|ref\|XP_505247.1\| hypothetical protein [Yarrowia lipolytica], gi\|49651117\|emb\|CAG78054.1\|...	67.0	[0..10]	[86..18]

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Predicted Domain #1

Region A:
Residues: [1-136]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSDSFQRQL VQRTNTLNSS IDNATLTILS RFQDILDIAI NEGKDKYTVA PEVYQIECHT  60
   61 VSMVRAVEQL LDVSRQIKSY WLTNSLSTSF PTVDYSEPDL EKVKRTLTKL QNHLLEVSLI 120
  121 EPEASETTEA PTVSDT

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.822	a.7.2	Enzyme IIa from lactose specific PTS, IIa-lac

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits