YRC Public Data Repository - Protein Structure Prediction

Protein:	srp72
Organism:	Schizosaccharomyces pombe
Length:	561 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for srp72.

Description	E-value	Query Range	Subject Range
gi\|73670079, gi\|... - gi\|73670079\|ref\|YP_306094.1\| TPR repeat-containing protein [Methanosarcina barkeri str. Fusaro], gi\|...	230.0	[0..2]	[544..336]
gi\|113476999, gi... - gi\|113476999\|ref\|YP_723060.1\| peptidase-like [Trichodesmium erythraeum IMS101], gi\|110168047\|gb\|ABG5...	224.0	[0..2]	[516..178]
gi\|33640682, gi\|... - gi\|33862569\|ref\|NP_894129.1\| TPR repeat-containing protein [Prochlorococcus marinus str. MIT 9313], ...	213.0	[0..1]	[549..482]
gi\|115936542, gi... - gi\|115936542\|ref\|XP_001177116.1\| PREDICTED: similar to UDP-N-acetylglucosaminyltransferase [Strongyl...	208.0	[0..2]	[514..25]
gi\|40789256, gi\|... - gi\|40789256\|ref\|NP_008878.2\| signal recognition particle 72kDa [Homo sapiens], gi\|33337544\|gb\|AAQ134...	203.0	[0..2]	[561..25]
gi\|116195872, gi... - gi\|88180447\|gb\|EAQ87915.1\| hypothetical protein CHGG_04534 [Chaetomium globosum CBS 148.51], gi\|1161...	203.0	[0..2]	[505..756]

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Predicted Domain #1

Region A:
Residues: [1-561]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNHEEEIEE LAQRIGKIEV GDTKSDIYQK VLNLIDIERY EHALKIIEKY LGETDAVYER  60
   61 AYCAFQLGKE DFSLEDKQFL QHLQAQKAYR LSDFSKALKI YEHLENDLPE QRADIRVNML 120
  121 AAASQLPGLQ LNNAVSLDDQ DSVFNLATRY LTIGDWNQAI ELLSSSLEKL ENSDSNSEDH 180
  181 KSQINLCRLQ LFFAYLQAGD NEKASKESLK ISKDCLDETS QAIFVNNLIS MSIDNPYISF 240
  241 RDLHGTNLEK ALSSLLASQK KQFIRNLALL DMAVGKQRSV RKEKKRNPEE SIYFSTILLR 300
  301 EETKSLISPK KLPGYLENLF KSDSDNIVVA LLLMQHKISN GNFRGALSIY QKLRTSLEAS 360
  361 QSLSVLYSPG LVGLGDALHY KIQSTGFKSQ LLHEAANYWR KQQSCEAKLL LCTRSLLAHL 420
  421 DERAPVSTIQ DDMSVIDDLL QWKGPISELV SCKVAALCYL DKEIESGMDK YLVPTKDLIT 480
  481 GIDVDDIEIR GVPVSAAIGP IKRSVEANSS NSSKKTRKRR KPTPKSFNPK ATPDPQRWIP 540
  541 KRDRTNVKIK SKGKSMQGGV A

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	19.045757
Match:	2gw1A
Description:	No description for 2gw1A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits