YRC Public Data Repository - Protein Structure Prediction

Protein:	spn6
Organism:	Schizosaccharomyces pombe
Length:	380 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for spn6.

Description	E-value	Query Range	Subject Range
gi\|119190373, gi... - gi\|90304579\|gb\|EAS34210.1\| hypothetical protein CIMG_05234 [Coccidioides immitis RS], gi\|119190373\|r...	300.0	[0..3]	[378..114]
gi\|70986973, gi\|... - gi\|70986973\|ref\|XP_748972.1\| septin AspB [Aspergillus fumigatus Af293], gi\|66846602\|gb\|EAL86934.1\| s...	291.0	[0..3]	[378..127]
gi\|134089864, gi... - gi\|50257384\|gb\|EAL20093.1\| hypothetical protein CNBF4190 [Cryptococcus neoformans var. neoformans B-...	282.0	[0..4]	[378..140]
gi\|58268310, gi\|... - gi\|58268310\|ref\|XP_571311.1\| septin ring protein [Cryptococcus neoformans var. neoformans JEC21], g...	282.0	[0..4]	[378..140]
gi\|109114667 - gi\|109114667\|ref\|XP_001104631.1\| PREDICTED: similar to septin 4 isoform 3 [Macaca mulatta]	273.0	[0..9]	[358..223]
gi\|110756772 - gi\|110756772\|ref\|XP_001121636.1\| PREDICTED: similar to peanut CG8705-PA, isoform A [Apis mellifera]	270.0	[0..6]	[380..243]
gi\|115400025, gi... - gi\|115400025\|ref\|XP_001215601.1\| cell division control protein 3 [Aspergillus terreus NIH2624], gi\|1...	267.0	[0..3]	[378..5]
gi\|1791305 - gi\|1791305\|gb\|AAB41233.1\| septin B [Emericella nidulans]	267.0	[0..3]	[378..5]
gi\|49100009, gi\|... - gi\|67541036\|ref\|XP_664292.1\| hypothetical protein AN6688.2 [Aspergillus nidulans FGSC A4], ref\|XP_41...	267.0	[0..3]	[378..5]
gi\|220955920, gi... - gi\|220955920\|gb\|ACL90503.1\| pnut-PA [synthetic construct], gi\|220946224\|gb\|ACL85655.1\| pnut-PA [synt... pnut-PA, pnut-PB - The gene peanut is referred to in FlyBase by the symbol Dmel\pnut (CG8705, FBgn0013726). It is a pro...	267.0	[0..4]	[367..116]

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Predicted Domain #1

Region A:
Residues: [1-380]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLTENLQLL LNLDSLPSKR ENLIKRKECG LTIMLCGASG TGKTTFFNTL FATSLQPEKS  60
   61 YETAKETIAK KTLEVKKNKA VIEEDGFHIN LTVLDTPGFG DFIDNTSCWN TVAEYLDEQH 120
  121 ERYLIHDQNS LRVPRKDTRV HVCLYFITPV SFGMLPLDVL AMKELSTHVN LVPVIAKADT 180
  181 FTTPELTQIK QKIRRILEAQ SIDVFHPSTE YSDYETAELL DSSLPYAIIS SVNEVCKDDG 240
  241 EKSQGRRYPW GTSEIYEETH CDFLKLKKLL INRHMLELIN TTETNIYERY RREQLTNRKS 300
  301 GIPKLKKEHY ERLNNEKRAI QQKITQMTNE TESFFQAKEE KMIETRDALN SELSEYHERI 360
  361 RALETQIESL KSYKGRGHKK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	62.0
Match:	2qagC
Description:	No description for 2qagC was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits