YRC Public Data Repository - Protein Structure Prediction

Protein:	spn5
Organism:	Schizosaccharomyces pombe
Length:	464 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for spn5.

Description	E-value	Query Range	Subject Range
gi\|119190373, gi... - gi\|90304579\|gb\|EAS34210.1\| hypothetical protein CIMG_05234 [Coccidioides immitis RS], gi\|119190373\|r...	265.0	[0..6]	[459..49]
gi\|21952252 - gi\|21952252\|gb\|AAM82548.1\|AF512946_1 MLL/SEPTIN6 fusion protein [Homo sapiens]	264.0	[0..9]	[463..36]
gi\|109114667 - gi\|109114667\|ref\|XP_001104631.1\| PREDICTED: similar to septin 4 isoform 3 [Macaca mulatta]	257.0	[0..15]	[432..127]
SEP10_MOUSE - Septin-10 OS=Mus musculus GN=Sept10 PE=1 SV=1	252.0	[0..83]	[463..4]
gi\|2133645, gi\|7... - sp\|P40797\|PNUT_DROME Peanut protein, gi\|508229\|gb\|AAA19603.1\| Peanut, pir\|\|A54294 cell division con...	252.0	[0..4]	[438..44]
gi\|54635456, gi\|... - gi\|54635456\|gb\|EAL24859.1\| GA21269-PA [Drosophila pseudoobscura], gi\|125807142\|ref\|XP_001360284.1\| G...	251.0	[0..4]	[454..43]
gi\|110756772 - gi\|110756772\|ref\|XP_001121636.1\| PREDICTED: similar to peanut CG8705-PA, isoform A [Apis mellifera]	250.0	[0..9]	[464..171]

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Predicted Domain #1

Region A:
Residues: [1-91]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSSNLSSSM PQEGQLKLTE EAIITIKQVD ESSAKRSVSN ESRKSKDVTR KEQIASDQQG  60
   61 DDQCPQSDTA KDKKTEFKQD EVPNSNGKSI P

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	19.522879
Match:	1xzpA
Description:	Structure of the GTP-binding protein TrmE from Thermotoga maritima
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [92-464]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TFHPCNNIGI NDFNHQHYSR VCRNGIDINL IVVGESSLGK TTFVNSFLQS NDTNFRPKKT  60
   61 MDFVEHKATL SDGDQKFNLT IVDTPGFGDK SDNSNCWRPI ATNLLHRLNA YFQNEVKMDR 120
  121 ETSEIDSRIH GCLFFINPNG HRLQPLEIYI MKKIDQFVNI IPVIGKADTM TSDELNHFKK 180
  181 RVIADMVREK IRYFREPHNE KKAKIPIPFA IVGAGAPIEH DGKCIRGRAY PWGLVDIDDP 240
  241 KQSDFCQLRN FLLYTHIEGL KHKTHKLIYD TFRTEKLVAL NATPGSQFIS AEEMNQKYIS 300
  301 EQTQLVEEAL TKVMKEKYRE KENNLELLET NLKTHHKDYK HALKKRITAL EEEKNRLIKE 360
  361 IGPEKVKKAG ILA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	58.69897
Match:	2qagC
Description:	No description for 2qagC was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits