YRC Public Data Repository - Protein Structure Prediction

Protein:	spn4
Organism:	Schizosaccharomyces pombe
Length:	380 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for spn4.

Description	E-value	Query Range	Subject Range
gi\|119190373, gi... - gi\|90304579\|gb\|EAS34210.1\| hypothetical protein CIMG_05234 [Coccidioides immitis RS], gi\|119190373\|r...	397.0	[0..1]	[380..114]
gi\|70986973, gi\|... - gi\|70986973\|ref\|XP_748972.1\| septin AspB [Aspergillus fumigatus Af293], gi\|66846602\|gb\|EAL86934.1\| s...	389.0	[0..1]	[380..127]
gi\|134089864, gi... - gi\|50257384\|gb\|EAL20093.1\| hypothetical protein CNBF4190 [Cryptococcus neoformans var. neoformans B-...	377.0	[0..2]	[380..140]
gi\|58268310, gi\|... - gi\|58268310\|ref\|XP_571311.1\| septin ring protein [Cryptococcus neoformans var. neoformans JEC21], g...	377.0	[0..2]	[380..140]
SEPT7_RAT - Septin-7 OS=Rattus norvegicus GN=Sept7 PE=1 SV=1	372.0	[0..3]	[380..24]
gi\|28173550 - gi\|28173550\|ref\|NP_033989.2\| cell division cycle 10 homolog [Mus musculus]	371.0	[0..3]	[380..25]
gi\|115400025, gi... - gi\|115400025\|ref\|XP_001215601.1\| cell division control protein 3 [Aspergillus terreus NIH2624], gi\|1...	370.0	[0..1]	[380..5]
gi\|207080196 - gi\|207080196\|ref\|NP_001128835.1\| septin 7 isoform 2 [Pongo abelii] gi\|55730205 - gi\|55730205\|emb\|CAH91826.1\| hypothetical protein [Pongo abelii]	370.0	[0..1]	[380..20]
SEPT7_PONAB - Septin-7 OS=Pongo abelii GN=SEPT7 PE=2 SV=2 SEPT7_BOVIN - Septin-7 OS=Bos taurus GN=SEPT7 PE=2 SV=2 SEPT7 - septin 7 SEPT7_PONPY - Septin-7 - Pongo pygmaeus (Orangutan)	369.0	[0..3]	[380..25]

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Predicted Domain #1

Region A:
Residues: [1-380]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNEEETNFVG IADLPNQRHK IVSRNGVAFT LMLCGESGLG KTTFCNTLFS TTIKSHMGPE  60
   61 KVRAKHAEKT VEIEITKAEL EEKNFHLRLT VIDTPGFGDF INNSGCWESV VEFIEDQHES 120
  121 YMRQDQQPDR RKIIDMRIHA CLYFLRPVRN GVRPMDLEAM KHISKRVNLI PVIAKADMYT 180
  181 RRDLALYKTR ISQVLEYHQV NVYKPNMDEG DPVFHRQIQG IINCMPFAIV GSEDDIRTPD 240
  241 GRVVKGREYP WGIVEIENEE HCDFKQLRNI LIRSCMLDLI QTTEEKLYEQ YRQEQMKVRQ 300
  301 YGEPKLRTID NAKFKEEEEN LRKRFTEQVR VEETRFRQWE QRLIAERDSL NKDLEAQHVQ 360
  361 IKQIELEIER LKAATSSRKR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	102.0
Match:	2qagC
Description:	No description for 2qagC was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits