YRC Public Data Repository - Protein Structure Prediction

Protein:	spk1
Organism:	Schizosaccharomyces pombe
Length:	372 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for spk1.

Description	E-value	Query Range	Subject Range
gi\|27803020, gi\|... - gi\|27803020\|emb\|CAD60723.1\| unnamed protein product [Podospora anserina], gi\|188219262\|emb\|CAP49242.... gi\|189091818 - gi\|189091818\|ref\|XP_001929742.1\| [Podospora anserina]	352.0	[0..29]	[369..11]
gi\|49650181, gi\|... - gi\|50553802\|ref\|XP_504312.1\| YALI0E23496p [Yarrowia lipolytica], gi\|49650181\|emb\|CAG79911.1\| unnamed... gi\|49650181 - gi\|49650181\|emb\|CAG79911.1\| YALI0E23496p [Yarrowia lipolytica]	352.0	[0..20]	[369..1]
gi\|13620175 - gi\|13620175\|emb\|CAC36428.1\| mitogen activated protein kinase [Gibberella fujikuroi]	350.0	[0..18]	[369..2]
gi\|123292826, gi... - gi\|41351062\|gb\|AAH65868.1\| Mitogen-activated protein kinase 1 [Danio rerio], gi\|123292826\|emb\|CAM162...	348.0	[0..1]	[368..1]
gi\|12005890 - gi\|12005890\|gb\|AAG44657.1\|AF258529_1 MAP kinase 1 [Gaeumannomyces graminis]	347.0	[0..17]	[369..2]
gi\|48843356 - gi\|48843356\|dbj\|BAD23843.1\| extracellular signal regulated protein kinase 2 [Cyprinus carpio]	347.0	[0..1]	[368..1]
gi\|76653521 - gi\|76653521\|ref\|XP_885698.1\| PREDICTED: similar to mitogen activated protein kinase 3 isoform 2 [Bos...	346.0	[0..11]	[368..15]
gi\|71011643, gi\|... - gi\|71011643\|ref\|XP_758478.1\| hypothetical protein UM02331.1 [Ustilago maydis 521], ref\|XP_399946.1\| ...	345.0	[0..14]	[371..168]

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Predicted Domain #1

Region A:
Residues: [1-372]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASATSTPTI ADGNSNKESV ATSRSPHTHD LNFELPEEYE MINLIGQGAY GVVCAALHKP  60
   61 SGLKVAVKKI HPFNHPVFCL RTLREIKLLR HFRHENIISI LDILPPPSYQ ELEDVYIVQE 120
  121 LMETDLYRVI RSQPLSDDHC QYFTYQILRA LKAMHSAGVV HRDLKPSNLL LNANCDLKVA 180
  181 DFGLARSTTA QGGNPGFMTE YVATRWYRAP EIMLSFREYS KAIDLWSTGC ILAEMLSARP 240
  241 LFPGKDYHSQ ITLILNILGT PTMDDFSRIK SARARKYIKS LPFTPKVSFK ALFPQASPDA 300
  301 IDLLEKLLTF NPDKRITAEE ALKHPYVAAY HDASDEPTAS PMPPNLVDLY CNKEDLEIPV 360
  361 LKALIFREVN FR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	92.522879
Match:	1wzyA
Description:	Crystal structure of human ERK2 complexed with a pyrazolopyridazine derivative
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits