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View Structure Prediction Details

Protein: spd1
Organism: Schizosaccharomyces pombe
Length: 124 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for spd1.

Description E-value Query
Range
Subject
Range
gi|114197790, gi... - gi|115492605|ref|XP_001210930.1| predicted protein [Aspergillus terreus NIH2624], gi|114197790|gb|EA...
51.0 [0..10] [103..43]
gi|119186383, gi... - gi|90302584|gb|EAS32215.1| hypothetical protein CIMG_03239 [Coccidioides immitis RS], gi|119186383|r...
50.0 [0..17] [67..47]

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Predicted Domain #1
Region A:
Residues: [1-124]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHSSKRVMTT KTHVEQPESS MRPQLPESIQ GSLMDVGMRV RKSISTGYKS KQTTFPAYNP  60
   61 PLYNTVSENI ALKNTAFSYE PNGTKRPFEQ AIPNYNWANP PQDFEEPEWL KPFDVVMEGT 120
  121 NERL

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 27.69897
Match: PF08591.1
Description: No description for PF08591.1 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle