YRC Public Data Repository - Protein Structure Prediction

Protein:	spc3
Organism:	Schizosaccharomyces pombe
Length:	185 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for spc3.

Description	E-value	Query Range	Subject Range
SPCS3_CHICK - Signal peptidase complex subunit 3 OS=Gallus gallus GN=SPC22 PE=1 SV=1	228.0	[0..3]	[185..1]
ENSCJAT00000010473 - null gi\|125988403, gi... - gi\|32766258\|gb\|AAH54817.1\| Signal peptidase complex subunit 3 homolog (S. cerevisiae) [Mus musculus]... SPCS3_BOVIN - Signal peptidase complex subunit 3 OS=Bos taurus GN=SPCS3 PE=2 SV=1 tr\|U3KPB2\|U3KPB2... - Uncharacterized protein OS=Oryctolagus cuniculus GN=SPCS3 PE=4 SV=1 SPCS3 - signal peptidase complex subunit 3 homolog (S. cerevisiae) SPCS3_CANLF - Signal peptidase complex subunit 3 OS=Canis lupus familiaris GN=SPCS3 PE=1 SV=1	224.0	[0..3]	[185..1]
gi\|114596992 - gi\|114596992\|ref\|XP_001159544.1\| PREDICTED: similar to microsomal signal peptidase [Pan troglodytes]	223.0	[0..3]	[185..1]
gi\|109503341 - gi\|109503341\|ref\|XP_001058844.1\| PREDICTED: similar to signal peptidase complex subunit 3 homolog [R...	223.0	[0..3]	[185..1]
gi\|26390287 - gi\|26390287\|dbj\|BAC25873.1\| unnamed protein product [Mus musculus]	223.0	[0..3]	[185..1]
gi\|47937536, gi\|... - gi\|47937536\|gb\|AAH72107.1\| MGC79052 protein [Xenopus laevis], gi\|147905965\|ref\|NP_001085217.1\| hypot...	221.0	[0..3]	[183..1]
gi\|47208499 - gi\|47208499\|emb\|CAF90518.1\| unnamed protein product [Tetraodon nigroviridis]	219.0	[0..3]	[185..1]
gi\|62859239 - gi\|62859239\|ref\|NP_001017094.1\| signal peptidase complex subunit 3 [Xenopus (Silurana) tropicalis]	219.0	[0..3]	[183..1]
gi\|45709054, gi\|... - gi\|47086139\|ref\|NP_998113.1\| signal peptidase complex subunit 3 homolog [Danio rerio], gi\|45709054\|g...	218.0	[0..3]	[185..1]

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Predicted Domain #1

Region A:
Residues: [1-185]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIVDTFTNRG STFFSKLSTV LFFLCAVITF QGVIQRREVE LDTPVYVHYA KYRSARFYHA  60
   61 FRNVRQQYAQ VKFNMDADLS ELWDWNTKHV VVYLVASYST EKHEKNQVVV WDKILSSPEE 120
  121 SKMFMKDTLS NIQAHPFNEY SNQFEGKNAT YTLHWTVSPK MGFLSWGAGP GSYEIPFHKI 180
  181 ITQPK

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	113.853872
Match:	PF04573.3
Description:	No description for PF04573.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits