YRC Public Data Repository - Protein Structure Prediction

Protein:	ssp2
Organism:	Schizosaccharomyces pombe
Length:	576 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ssp2.

Description	E-value	Query Range	Subject Range
gi\|42415257 - gi\|42415257\|dbj\|BAD10884.1\| protein kinase [Schizosaccharomyces pombe]	465.0	[0..1]	[576..1]
SNF1_CANGA - Carbon catabolite-derepressing protein kinase OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM ... SNF1_CANGA - Carbon catabolite-derepressing protein kinase OS=Candida glabrata GN=SNF1 PE=3 SV=2	416.0	[0..30]	[574..35]
gi\|7434353, gi\|2... - pir\|\|S72513 FOG2 protein - yeast (Kluyveromyces marxianus var. lactis), gi\|49640297\|emb\|CAH02754.1\| ... gi\|50302463, gi\|... - gi\|50302463\|ref\|XP_451166.1\| unnamed protein product [Kluyveromyces lactis], gi\|49640297\|emb\|CAH0275...	410.0	[0..3]	[574..5]
gi\|1469801 - gi\|1469801\|gb\|AAB48642.1\| serine/threonine kinase	408.0	[0..30]	[574..35]
gi\|46437336, gi\|... - gi\|68480627\|ref\|XP_715699.1\| likely protein kinase [Candida albicans SC5314], gi\|46437336\|gb\|EAK9668... orf19.1936 - SNF1 CGDID:CAL0002564 Assembly 19, Contig19-10137 (19847, 17991) CDS, reverse complemented, translat... gi\|238882537 - gi\|238882537\|gb\|EEQ46175.1\| carbon catabolite derepressing protein kinase [Candida albicans WO-1]	405.0	[0..12]	[574..31]
gi\|207346229 - gi\|207346229\|gb\|EDZ72787.1\| YDR477Wp-like protein [Saccharomyces cerevisiae AWRI1631] SNF1_YEAST - Carbon catabolite-derepressing protein kinase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288... SNF1 - AMP-activated serine/threonine protein kinase found in a complex containing Snf4p and members of the... gi\|151942440 - gi\|151942440\|gb\|EDN60796.1\| serine/threonine protein kinase [Saccharomyces cerevisiae YJM789]	400.0	[0..30]	[574..51]
SNF1_CANTR - Carbon catabolite-derepressing protein kinase OS=Candida tropicalis GN=SNF1 PE=3 SV=1	400.0	[0..15]	[574..33]
gi\|45190377, gi\|... - gi\|45190377\|ref\|NP_984631.1\| AEL230Wp [Ashbya gossypii ATCC 10895], gi\|44983273\|gb\|AAS52455.1\| AEL23... gi\|44983273 - gi\|44983273\|gb\|AAS52455.1\| AEL230Wp [Ashbya gossypii ATCC 10895]	392.0	[0..13]	[574..19]
gi\|49655633, gi\|... - gi\|50422777\|ref\|XP_459965.1\| hypothetical protein DEHA0E15741g [Debaryomyces hansenii CBS767], gi\|49...	390.0	[0..16]	[574..37]

Back

Predicted Domain #1

Region A:
Residues: [1-303]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQPQEVDLME NSTMRNGARV LPPEAISKRH IGPYIIRETL GEGSFGKVKL ATHYKTQQKV  60
   61 ALKFISRQLL KKSDMHMRVE REISYLKLLR HPHIIKLYDV ITTPTDIVMV IEYAGGELFD 120
  121 YIVEKKRMTE DEGRRFFQQI ICAIEYCHRH KIVHRDLKPE NLLLDDNLNV KIADFGLSNI 180
  181 MTDGNFLKTS CGSPNYAAPE VINGKLYAGP EVDVWSCGIV LYVMLVGRLP FDDEFIPNLF 240
  241 KKVNSCVYVM PDFLSPGAQS LIRRMIVADP MQRITIQEIR RDPWFNVNLP DYLRPMEEVQ 300
  301 GSY

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	78.09691
Match:	2fh9A
Description:	No description for 2fh9A was found.

Predicted Domain #2

Region A:
Residues: [304-421]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ADSRIVSKLG EAMGFSEDYI VEALRSDENN EVKEAYNLLH ENQVIQEKSH LSKSKRVDSF  60
   61 LSVSPPAFSE YTSELQKKSK QELIDPTLEG PRWTVSDPPT YAKQTIDSNI CVLVPTAE

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [422-576]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KNKLEMRTLA DAASAVDTSQ STRKKSRRNK WHFGVRCRGD APEILLAVYR ALQRAGAQFT  60
   61 VPKPVNGKYR SDMYTIKSRW EIPHCKREGK NTYAYIELQL YEVMPGCFML DVKSNGYKDI 120
  121 YSHPERTADH GMDDLKSSFP FLDLCAMLVC KLFSA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	22.69897
Match:	2ooxA
Description:	No description for 2ooxA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits