YRC Public Data Repository - Protein Structure Prediction

Protein:	sco1
Organism:	Schizosaccharomyces pombe
Length:	263 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for sco1.

Description	E-value	Query Range	Subject Range
gi\|51892064, gi\|... - gi\|51892064\|ref\|YP_074755.1\| 2-cys peroxiredoxin [Symbiobacterium thermophilum IAM 14863], gi\|518557...	172.0	[0..91]	[261..1]
gi\|28926370, gi\|... - gi\|38567240\|emb\|CAE76531.1\| probable SCO1 protein precursor [Neurospora crassa], gi\|32420339\|ref\|XP_... gi\|85113776 - gi\|85113776\|ref\|XP_964583.1\| hypothetical protein [Neurospora crassa OR74A]	170.0	[0..3]	[260..17]
gi\|33634943, gi\|... - gi\|33863026\|ref\|NP_894586.1\| thioredoxin peroxidase [Prochlorococcus marinus str. MIT 9313], gi\|3363...	169.0	[0..86]	[260..1]
gi\|116068112, gi... - gi\|116074890\|ref\|ZP_01472151.1\| thioredoxin peroxidase [Synechococcus sp. RS9916], gi\|116068112\|gb\|E...	168.0	[0..86]	[260..1]
gi\|86167507, gi\|... - gi\|87124628\|ref\|ZP_01080476.1\| thioredoxin peroxidase [Synechococcus sp. RS9917], gi\|86167507\|gb\|EAQ...	167.0	[0..86]	[260..1]
PRDX_ASCSU - Peroxiredoxin OS=Ascaris suum PE=2 SV=1	167.0	[0..89]	[260..1]
gi\|33865747, gi\|... - gi\|33865747\|ref\|NP_897306.1\| thioredoxin peroxidase [Synechococcus sp. WH 8102], gi\|33632917\|emb\|CAE...	167.0	[0..92]	[260..7]
gi\|78197313, gi\|... - gi\|78212854\|ref\|YP_381633.1\| thioredoxin peroxidase [Synechococcus sp. CC9605], gi\|78197313\|gb\|ABB35...	165.0	[0..92]	[260..7]
gi\|17232133, gi\|... - gi\|17232133\|ref\|NP_488681.1\| peroxiredoxin [Nostoc sp. PCC 7120], gi\|17133778\|dbj\|BAB76340.1\| peroxi... gi\|75701970, gi\|... - gi\|75908245\|ref\|YP_322541.1\| Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen... gi\|25285298 - pir\|\|AI2385 peroxiredoxin [imported] - Nostoc sp. (strain PCC 7120)	165.0	[0..88]	[260..7]
gi\|78184723, gi\|... - gi\|78184723\|ref\|YP_377158.1\| thioredoxin peroxidase [Synechococcus sp. CC9902], gi\|78169017\|gb\|ABB26...	164.0	[0..92]	[260..10]

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Predicted Domain #1

Region A:
Residues: [1-263]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFRRGLVFSR HCHYSLIRPR FPLNRTCLAR FADGRKNLAT DNRTQTYQSW RGMISIRALL  60
   61 LAAATSVGLY AYFQHEKKKV LERQNDKVLA TIGRPQLGGA FSLIDHHGNR VTDNDFKGKF 120
  121 SLIYFGFTRC PDICPDELDK MSAAIDIVNN VVGDVVYPIF ITCDPARDPP QEMAEYLEDF 180
  181 NPKIVGLTGS YEEIKDICKK FRVYFSTPKN IDPKKDDYLV DHSVFFYLMD PEGKFIEVFG 240
  241 RNSTSEDLAR AIGSYYLSRK KQK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	22.69897
Match:	2b7jA
Description:	No description for 2b7jA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits