YRC Public Data Repository - Protein Structure Prediction

Protein:	sec18
Organism:	Schizosaccharomyces pombe
Length:	792 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for sec18.

Description	E-value	Query Range	Subject Range
CD48D_ARATH - Cell division control protein 48 homolog D OS=Arabidopsis thaliana GN=CDC48D PE=1 SV=1	489.0	[0..32]	[787..2]
gi\|98962497 - gi\|98962497\|gb\|ABF59516.1\| putative spindle disassembly related protein CDC48 [Nicotiana tabacum]	487.0	[0..33]	[791..3]
CDC48_SOYBN - Cell division cycle protein 48 homolog OS=Glycine max GN=CDC48 PE=2 SV=1	486.0	[0..32]	[787..2]
gi\|222612898, gi... - gi\|222612898\|gb\|EEE51030.1\| hypothetical protein OsJ_31677 [Oryza sativa Japonica Group], gi\|1102891...	485.0	[0..25]	[787..1]
CDC48_CAPAN - Cell division cycle protein 48 homolog OS=Capsicum annuum GN=CAFP PE=2 SV=1	481.0	[0..52]	[791..22]
gi\|73971214 - gi\|73971214\|ref\|XP_866075.1\| PREDICTED: similar to Transitional endoplasmic reticulum ATPase (TER AT...	476.0	[0..52]	[786..17]
gi\|54658389 - gi\|54658389\|gb\|EAL37040.1\| cell division cycle protein 48 [Cryptosporidium hominis] gi\|67613096 - gi\|67613096\|ref\|XP_667275.1\| cell division cycle protein 48 [Cryptosporidium hominis TU502]	475.0	[0..50]	[779..30]

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Predicted Domain #1

Region A:
Residues: [1-792]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSRWKLPFM SNKGTPEQPM RKPLSGSYSH NSAGPTPNMS PFEQKPPLPT HMDVRRPSGP  60
   61 FRIVKATSTE DALTNCIIVS PMDFKQQYII VDNSRVFSTK PVPGFPQGCL GASQPHREWA 120
  121 SWSLNQQVHV ADYDPYGPHG APYLHSMTLE VDFQNRNRTT NEPFDGEEMA KLFCSSYQSQ 180
  181 VFSPGQKIVF DFRSYNIKAT VRTISCVDLL IGENQDAENT ADTSKRGLLT SQTEIQFFKA 240
  241 AHSALRLKAS MTRPASNAIL QPGFKFEDMG IGGLDSEFSA IFRRAFASRL FPPGMVEKLG 300
  301 INHVKGILLY GPPGTGKTLI ARQIGKMLNA REPKIVNGPE ILNKYVGQSE ENVRKLFADA 360
  361 EREYRDRGEE SGLHIIIFDE LDAICKKRGS SGGDTGVGDQ VVNQLLAKMD GVDQLNNILV 420
  421 IGMTNRKDMI DEALLRPGRL EVHMEISLPD EHGRLQILKI HTSRMASNGI LENDVDMEEL 480
  481 ASLTKNFSGA EIAGLIKSAS SFAFYRHIKV GTTAAVSGNL ENIKVNRNDF LNALSEVRPA 540
  541 YGVSEEELES RVQGGIINFG KHIEEIITEG KLFVQQVKNS ERTRLVSVLL SGPIASGKTA 600
  601 LAATIALGSE FPFVKLVSAE SMVGMNENAR VAHVNRVFED SYKSPLSVIV VDEIERIIDW 660
  661 VPIGPRFSNT LLQTLMVLFK KQPPKGHRLL ILATTSERTM LSRMDMTQSF DAEIAVPNVS 720
  721 NVTELDRIIQ SIDSFADSNV RADTLQRLQN FTGTDAVNVG VAKILMIAET AKQDVDVVSC 780
  781 FVEAMARAIP ME

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	130.0
Match:	1oz4A
Description:	VCP/p97
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits