YRC Public Data Repository - Protein Structure Prediction

Protein:	sec10
Organism:	Schizosaccharomyces pombe
Length:	811 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for sec10.

Description	E-value	Query Range	Subject Range
gi\|85111477 - gi\|85111477\|ref\|XP_963955.1\| hypothetical protein NCU09313 [Neurospora crassa OR74A] gi\|32423135, gi\|... - gi\|32423135\|ref\|XP_332005.1\| hypothetical protein [Neurospora crassa], gi\|28925708\|gb\|EAA34719.1\| hy...	763.0	[0..16]	[790..24]
gi\|46108750, gi\|... - gi\|46108750\|ref\|XP_381433.1\| hypothetical protein FG01257.1 [Gibberella zeae PH-1], gi\|42547723\|gb\|E...	753.0	[0..16]	[790..19]
gi\|145011359, gi... - gi\|39945154\|ref\|XP_362114.1\| hypothetical protein MGG_04559 [Magnaporthe grisea 70-15], gb\|EAA50800....	735.0	[0..17]	[790..21]
gi\|116180326, gi... - gi\|88185088\|gb\|EAQ92556.1\| hypothetical protein CHGG_00791 [Chaetomium globosum CBS 148.51], gi\|1161...	729.0	[0..16]	[790..20]
gi\|114187690, gi... - gi\|115449961\|ref\|XP_001218741.1\| conserved hypothetical protein [Aspergillus terreus NIH2624], gi\|11...	670.0	[0..16]	[790..26]
gi\|49131121, gi\|... - gi\|67903784\|ref\|XP_682148.1\| hypothetical protein AN8879.2 [Aspergillus nidulans FGSC A4], ref\|XP_41...	668.0	[0..16]	[790..20]
gi\|169786521 - gi\|169786521\|ref\|XP_001827721.1\| hypothetical protein [Aspergillus oryzae RIB40] gi\|83776469 - gi\|83776469\|dbj\|BAE66588.1\| unnamed protein product [Aspergillus oryzae]	666.0	[0..16]	[790..25]
gi\|44985737 - gi\|44985737\|gb\|AAS54361.1\| AGL130Cp [Ashbya gossypii ATCC 10895] gi\|44985737, gi\|... - gi\|45200967\|ref\|NP_986537.1\| AGL130Cp [Ashbya gossypii ATCC 10895], gi\|44985737\|gb\|AAS54361.1\| AGL13...	657.0	[0..1]	[791..1]
gi\|119195901, gi... - gi\|90307340\|gb\|EAS36971.1\| hypothetical protein CIMG_02325 [Coccidioides immitis RS], gi\|119195901\|r...	653.0	[0..17]	[790..28]
sec10-PA - The gene sec10 is referred to in FlyBase by the symbol Dmel\sec10 (CG6159, FBgn0027103). It is a pro...	647.0	[0..21]	[791..11]

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Predicted Domain #1

Region A:
Residues: [1-456]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTKNALNDS QIKLLNSLND NKGIPSTEFV EKFAESLYET QNDGSKKLSS IDGSIKSFAA  60
   61 CLHELNRLKS RVGDRIRDYA SASKQVQNEY HQKSNHLREK FAQVLELSRH LEDNVNDMRS 120
  121 GLVDAGQELE RAENNRKRIL SSAELLRYYL EFRSGKPQTL MDFFRTNNHD KMLLCAQRTR 180
  181 QLLALANEVD LPDSSETLAR IEKFSEFLET NFLKFFNNEY RKPNWKGMAS FGTILQEFNG 240
  241 GASVVREFVN QHEFFIAADK VQSRQGLEQD PIWLILPDPT QKIPPLIQTL SSLFSELCSV 300
  301 IEGDCAVIKR VFPNPELVLQ TFFQRIFGQS IQNRLEEVME IAKGKSNLAY LRTLQTVVSS 360
  361 LRKLVADLKT ILENRGFSVS DNSPLSLALN QYMEDLLVPF IEVDDYLKRE EHSLRSLFRL 420
  421 SLYKYTSYKI RLETPEPGLL RSLMTPLQGN MVAPTG

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	0.968
Match:	1ciiA
Description:	COLICIN IA
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [457-618]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VHSQFNTKTE GFLLRIADIQ ENLIQSGSFI TEDYITIEKN HSHLNSEKVY SFIGWHAEAL  60
   61 NRASILISSQ DLSVVISSLV NLLDKLIRED YVFKELSSIQ SYISSHDKSK NLDLHYLVDI 120
  121 RECKKIMGYF SAYLMSIVIP FTGVTASSRR ETVNILSSSI SV

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [619-811]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IECAVNDVFY ATVHALGDHL EIILSPYRQI SYAMTEEQID SSTELRQSMT RNVQNYLDYI  60
   61 KNLYHRLGPY DPSLLALKQK TATMLAAMLI SFAFRSKVTA AGALLLQNDI NFFHSTLTSW 120
  121 GIDTVDAKFK LILQLLSLLM VKIDVLPAVM QDKRKAGFSE MNIHEVLRLR FDLPENLKLQ 180
  181 LNKEEALLPP KSS

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits