YRC Public Data Repository - Protein Structure Prediction

Protein:	sss1
Organism:	Schizosaccharomyces pombe
Length:	70 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for sss1.

Description	E-value	Query Range	Subject Range
gi\|109500066, gi... - gi\|109501036\|ref\|XP_001057376.1\| PREDICTED: similar to Protein transport protein SEC61 gamma subunit...	133.0	[0..3]	[69..71]
gi\|268607536\|ref... - Sec61 gamma subunit [Danio rerio], Uncharacterized protein OS=Danio rerio GN=sec61g PE=3 SV=1 SC61G_MOUSE - Protein transport protein Sec61 subunit gamma OS=Mus musculus GN=Sec61g PE=3 SV=1 gi\|197246400, gi... - gi\|203097935\|ref\|NP_001128492.1\| SEC61, gamma subunit [Rattus norvegicus], gi\|197246400\|gb\|AAI68779.... gi\|149704862 - gi\|149704862\|ref\|XP_001498730.1\| PREDICTED: similar to SEC61 gamma [Equus caballus] gi\|542156480\|ref... - PREDICTED: protein transport protein Sec61 subunit gamma isoform X2 [Zonotrichia albicollis], PREDIC... SEC61G - Sec61 gamma subunit gi\|118086257 - gi\|118086257\|ref\|XP_001236152.1\| PREDICTED: similar to SEC61 gamma [Gallus gallus] gi\|114613545 - gi\|114613545\|ref\|XP_001152525.1\| PREDICTED: similar to SEC61 gamma [Pan troglodytes] gi\|117645636 - gi\|117645636\|emb\|CAL38284.1\| hypothetical protein [synthetic construct] CCDS5513.1_1 - null gi\|109066539 - gi\|109066539\|ref\|XP_001107920.1\| PREDICTED: similar to Protein transport protein SEC61 gamma subunit... HGNC:18277\|MIM:6... - gamma subunit tr\|G3HEF5\|G3HEF5... - Protein transport protein Sec61 subunit gamma OS=Cricetulus griseus GN=I79_008939 PE=3 SV=1 SC61G_BOVIN - Protein transport protein Sec61 subunit gamma OS=Bos taurus GN=SEC61G PE=3 SV=1 SC61G_CANLF - Protein transport protein Sec61 subunit gamma OS=Canis lupus familiaris GN=SEC61G PE=1 SV=1 gi\|221220970 - gi\|221220970\|gb\|ACM09146.1\| transport protein Sec61 subunit gamma [Salmo salar] ENSOCUP00000018881 - pep:novel chromosome:oryCun2:10:45982069:45988756:1 gene:ENSOCUG00000011065 transcript:ENSOCUT000000...	116.0	[0..3]	[69..2]
gi\|86196445, gi\|... - gi\|86196445\|gb\|EAQ71083.1\| hypothetical protein MGCH7_ch7g490 [Magnaporthe grisea 70-15], gi\|1492100...	115.0	[0..1]	[66..1]
SC61G_XENLA - Protein transport protein Sec61 subunit gamma OS=Xenopus laevis GN=sec61g PE=3 SV=1	115.0	[0..3]	[69..2]
SC61G_HARAN - Protein transport protein Sec61 subunit gamma OS=Harpagifer antarcticus GN=sec61g PE=3 SV=1	115.0	[0..3]	[69..2]
gi\|47207489, gi\|... - gi\|47223467\|emb\|CAF97954.1\| unnamed protein product [Tetraodon nigroviridis], gi\|47207489\|emb\|CAF911...	115.0	[0..3]	[69..2]
SC61G_GADMO - Protein transport protein Sec61 subunit gamma OS=Gadus morhua GN=sec61g PE=3 SV=1	114.0	[0..3]	[69..2]
SC61G_BRABE - Protein transport protein Sec61 subunit gamma OS=Branchiostoma belcheri GN=SEC61G PE=3 SV=1 gi\|229277345, gi... - gi\|229277345\|gb\|EEN48141.1\| hypothetical protein BRAFLDRAFT_114863 [Branchiostoma floridae], gi\|2194...	113.0	[0..3]	[69..2]

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Predicted Domain #1

Region A:
Residues: [1-70]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADNADDLFQ IPKNFYKEGS HFIKRCVKPD RKEFLSISKA VATGFVLMGL IGYIIKLIHI  60
   61 PINKVLVGGA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	14.69897
Match:	1rh5B
Description:	The structure of a protein conducting channel
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits