YRC Public Data Repository - Protein Structure Prediction

Protein:	ryh1
Organism:	Schizosaccharomyces pombe
Length:	201 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ryh1.

Description	E-value	Query Range	Subject Range
gi\|148230336, gi... - gi\|27924279\|gb\|AAH45014.1\| Rab1-prov protein [Xenopus laevis], gi\|148230336\|ref\|NP_001080138.1\| RAB1... gi\|52345478, gi\|... - gi\|52345478\|ref\|NP_001004787.1\| RAB1A, member RAS oncogene family [Xenopus (Silurana) tropicalis], g...	253.0	[0..1]	[201..1]
gi\|303734, gi\|738942 - gi\|738942\|prf\|\|2001457K GTP-binding protein, gi\|303734\|dbj\|BAA02118.1\| GTP-binding protein [Pisum sa... gi\|1098293, gi\|4... - pir\|\|S41430 GTP-binding protein, ras-like (clone vfa-ypt1) - fava bean, gi\|452359\|emb\|CAA82707.1\| g...	253.0	[0..1]	[200..1]
gi\|1370166 - gi\|1370166\|emb\|CAA98160.1\| RAB1C [Lotus japonicus]	253.0	[0..1]	[200..1]
gi\|61365844, gi\|... - gi\|61365844\|gb\|AAX42772.1\| RAB1A member RAS oncogene family [synthetic construct], gi\|54695924\|gb\|AA...	252.0	[0..1]	[201..1]
gi\|4586580 - gi\|4586580\|dbj\|BAA76422.1\| rab-type small GTP-binding protein [Cicer arietinum]	252.0	[0..1]	[200..1]
gi\|53733986 - gb\|AAH83951.1\| Unknown (protein for MGC:97957) [Xenopus laevis] gi\|55741705 - ref\|NP_001003153.1\| RAB1A, member RAS oncogene family [Canis familiaris] gi\|120419448, gi... - gi\|76629653\|ref\|XP_869337.1\| PREDICTED: similar to RAB1, member RAS oncogene family isoform 2 [Bos t... gi\|109103156 - gi\|109103156\|ref\|XP_001090072.1\| PREDICTED: similar to RAB1, member RAS oncogene family isoform 4 [M... gi\|61355917, gi\|... - gi\|61355926\|gb\|AAX41191.1\| RAB1A member RAS oncogene family [synthetic construct], gi\|61355917\|gb\|AA... tr\|G1TCS8\|G1TCS8... - pep:novel chromosome:oryCun2:2:121177308:121212010:1 gene:ENSOCUG00000017003 transcript:ENSOCUT00000... RAB1A - RAB1A, member RAS oncogene family RAB1A_RAT - Ras-related protein Rab-1A OS=Rattus norvegicus GN=Rab1A PE=1 SV=3 RAB1A_CANLF - Ras-related protein Rab-1A OS=Canis lupus familiaris GN=RAB1A PE=1 SV=3 gi\|159906367 - gi\|159906367\|gb\|ABX10872.1\| RAB1A [Capra hircus] RAB1A_MOUSE - Ras-related protein Rab-1A OS=Mus musculus GN=Rab1A PE=1 SV=3 tr\|M3VYP9\|M3VYP9... - RAB1A, member RAS oncogene family OS=Felis catus GN=RAB1A PE=4 SV=1 gi\|149727528 - gi\|149727528\|ref\|XP_001493347.1\| PREDICTED: similar to RAB1A, member RAS oncogene family [Equus caba...	252.0	[0..1]	[201..1]
gi\|50738954 - gi\|50738954\|ref\|XP_419342.1\| PREDICTED: similar to ras-related protein [Gallus gallus]	252.0	[0..8]	[201..196]
gi\|37360618 - gi\|37360618\|dbj\|BAC98287.1\| mKIAA3012 protein [Mus musculus]	252.0	[0..1]	[201..49]
RAB1A_PIG - Ras-related protein Rab-1A OS=Sus scrofa GN=RAB1A PE=2 SV=3	251.0	[0..1]	[201..1]

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Predicted Domain #1

Region A:
Residues: [1-201]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSENYSFSLR KFKLVFLGEQ SVGKTSLITR FMYDQFDNTY QATIGIDFLS KTMYLEDRTV  60
   61 RLQLWDTAGQ ERFRSLIPSY IRDSSVAIIV YDITNHNSFV NTEKWIEDVR AERGDDVIIV 120
  121 LVGNKTDLAD KRQVTQEEGE KKAKELKIMH METSAKAGHN VKLLFRKIAQ MLPGMENVET 180
  181 QSTQMIDVSI QPNENESSCN C

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	58.0
Match:	1yzqA
Description:	GppNHp-Bound Rab6 GTPase
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits