YRC Public Data Repository - Protein Structure Prediction

Protein:	mrps28
Organism:	Schizosaccharomyces pombe
Length:	288 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for mrps28.

Description	E-value	Query Range	Subject Range
gi\|34500108 - gi\|34500108\|gb\|AAQ73637.1\| ribosomal protein S15 precursor-like protein [Epichloe festucae]	221.0	[0..32]	[286..34]
gi\|49091698, gi\|... - gi\|67525431\|ref\|XP_660777.1\| hypothetical protein AN3173.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	219.0	[0..7]	[287..6]
gi\|85082073 - gi\|85082073\|ref\|XP_956841.1\| hypothetical protein NCU03394 [Neurospora crassa OR74A] gi\|18376366, gi\|... - gi\|32404078\|ref\|XP_322652.1\| predicted protein [Neurospora crassa], gi\|28917920\|gb\|EAA27605.1\| conse...	207.0	[0..33]	[287..35]
gi\|18394286, gi\|... - gi\|8927660\|gb\|AAF82151.1\|AC034256_15 Contains similarity to an unknown protein T21F11.5 gi\|6730725 f...	206.0	[0..14]	[280..135]
gi\|46100004, gi\|... - gi\|71020129\|ref\|XP_760295.1\| hypothetical protein UM04148.1 [Ustilago maydis 521], ref\|XP_401763.1\| ...	196.0	[0..38]	[286..58]
gi\|46138783, gi\|... - gi\|46138783\|ref\|XP_391082.1\| hypothetical protein FG10906.1 [Gibberella zeae PH-1], gi\|42551670\|gb\|E...	189.0	[0..33]	[287..35]
gi\|70999139, gi\|... - gi\|70999139\|ref\|XP_754291.1\| ribosomal protein S15 [Aspergillus fumigatus Af293], gi\|66851928\|gb\|EAL... gi\|159127308 - gi\|159127308\|gb\|EDP52423.1\| conserved hypothetical protein [Aspergillus fumigatus A1163]	188.0	[0..9]	[287..8]
gi\|83770784 - gi\|83770784\|dbj\|BAE60917.1\| unnamed protein product [Aspergillus oryzae] gi\|169763712 - gi\|169763712\|ref\|XP_001727756.1\| hypothetical protein [Aspergillus oryzae RIB40]	186.0	[0..8]	[287..7]
gi\|12005982 - gi\|12005982\|gb\|AAG44697.1\|AF265439_1 DC37 [Homo sapiens]	178.0	[0..89]	[277..22]

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Predicted Domain #1

Region A:
Residues: [1-205]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRLFEGAFQP WKLASTNLMQ QCLLLNKKSQ FHTTCILQGL KKQKANQRRK QNLKRREELR  60
   61 KQNLDTLADP IIGHSSEWIA RLLKPYEILV ERKKPNFPIR SIKFPASMET INLIVEKFEK 120
  121 IRASATEETK DFIKLNEVNE FPSSDTSLES NQDGFERLHP LAERLERMSQ LSDLRKESIH 180
  181 RIFNIENSNS KTLRLNNKQL AVESF

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [206-288]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ARNERDTGSP EVQAAVYTSR ILALSDHCKN HKKDQTGKRM LRYYVHQRQR MLKYLRKVNF  60
   61 DRYVHCIKNL GLTDELVLRE VTQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	29.39794
Match:	2qalO
Description:	No description for 2qalO was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits