YRC Public Data Repository - Protein Structure Prediction

Protein:	rps5
Organism:	Schizosaccharomyces pombe
Length:	203 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for rps5.

Description	E-value	Query Range	Subject Range
gi\|109460985, gi... - gi\|109460985\|ref\|XP_001062647.1\| PREDICTED: similar to ribosomal protein S5 [Rattus norvegicus], gi\|...	283.0	[0..4]	[203..54]
gi\|40643036 - gi\|40643036\|emb\|CAD91445.1\| ribosomal protein S5 [Crassostrea gigas]	281.0	[0..1]	[203..5]
gi\|61369836 - gi\|61369836\|gb\|AAX43400.1\| ribosomal protein S5 [synthetic construct]	280.0	[0..4]	[203..3]
gi\|109126282, gi... - gi\|109126284\|ref\|XP_001097103.1\| PREDICTED: similar to ribosomal protein S5 isoform 2 [Macaca mulatt... CCDS12978.1_1 - null gi\|123981762, gi... - gi\|61359863\|gb\|AAX41778.1\| ribosomal protein S5 [synthetic construct], gi\|123996585\|gb\|ABM85894.1\| r... RPS5 - ribosomal protein S5 ENSCJAT00000000563 - null gi\|194216174 - gi\|194216174\|ref\|XP_001495410.2\| PREDICTED: similar to ribosomal protein S5 [Equus caballus] gi\|114679433, gi... - gi\|114679433\|ref\|XP_001147216.1\| PREDICTED: similar to ribosomal protein S5 isoform 3 [Pan troglodyt... gi\|73946777, gi\|... - gi\|73946777\|ref\|XP_861863.1\| PREDICTED: similar to ribosomal protein S5 isoform 5 [Canis familiaris]... RS5_BOVIN - 40S ribosomal protein S5 OS=Bos taurus GN=RPS5 PE=2 SV=3 tr\|G1TFM5\|G1TFM5... - pep:novel scaffold:oryCun2:GL018763:1362295:1367921:1 gene:ENSOCUG00000024505 transcript:ENSOCUT0000...	280.0	[0..4]	[203..3]
gi\|74139334, gi\|... - gi\|74214786\|dbj\|BAE31228.1\| unnamed protein product [Mus musculus], gi\|74211025\|dbj\|BAE37616.1\| unna...	279.0	[0..4]	[203..3]
gi\|29825585 - gi\|29825585\|gb\|AAO92286.1\| 40S ribosomal protein S5 [Dermacentor variabilis]	278.0	[0..1]	[203..1]
gi\|15294021 - gi\|15294021\|gb\|AAK95187.1\|AF402813_1 40S ribosomal protein S5 [Ictalurus punctatus]	277.0	[0..1]	[203..1]

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Predicted Domain #1

Region A:
Residues: [1-65]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATSSLTPGV SLDENGSIKL FNKFPFEGVE VKDISLVDYI TIGNGQPLPH TAGRFQTKRF  60
   61 RKARC

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	2.5
Match:	1iqvA
Description:	Ribosomal protein S7
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [66-203]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FIVERLTNSL MMNGRNNGKK LLATRIVKHA FEIIALLTDQ NPLQVLVDAV AACGPREDST  60
   61 RIGSAGTVRR QAVDVSPLRR VNQALALITI GAREAAFRNV KSISECLAEE IINAAKGSSN 120
  121 SYAIKKKDEL ERVAKSNR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	46.69897
Match:	1s1hG
Description:	Structure of the ribosomal 80S-eEF2-sordarin complex from yeast obtained by docking atomic models for RNA and protein components into a 11.7 A cryo-EM map. This file, 1S1H, Contains 40S subunit. The 60S Ribosomal Subunit Is In File 1S1I.
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits