YRC Public Data Repository - Protein Structure Prediction

Protein:	rps403
Organism:	Schizosaccharomyces pombe
Length:	262 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for rps403.

Description	E-value	Query Range	Subject Range
RS4X_MACFU - 40S ribosomal protein S4, X isoform OS=Macaca fuscata fuscata GN=RPS4X PE=2 SV=3 RS4X_MESAU - 40S ribosomal protein S4, X isoform OS=Mesocricetus auratus GN=RPS4X PE=2 SV=2 RS4X_FELCA - 40S ribosomal protein S4, X isoform OS=Felis catus GN=RPS4X PE=2 SV=2 RS4X_CHLAE - 40S ribosomal protein S4, X isoform OS=Chlorocebus aethiops GN=RPS4X PE=2 SV=3 gi\|6519820 - gi\|6519820\|dbj\|BAA87932.1\| ribosomal protein S4X (RPS4X) [Macaca fuscata] gi\|1083572 - gi\|1083572\|pir\|\|A55276 ribosomal protein S4 - western wild mouse gi\|2148029, gi\|2... - gi\|220321\|dbj\|BAA01858.1\| ribosomal protein S4 [Mesocricetus sp.], gi\|2148029\|pir\|\|I48169 ribosomal ... gi\|57135 - gi\|57135\|emb\|CAA32427.1\| unnamed protein product [Rattus rattus] gi\|114689107, gi... - gi\|114689107\|ref\|XP_001139217.1\| PREDICTED: hypothetical protein isoform 3 [Pan troglodytes], gi\|114... gi\|149759012, gi... - gi\|255653020\|ref\|NP_001157422.1\| ribosomal protein S4 [Equus caballus], gi\|149759012\|ref\|XP_00148806... gi\|123993841, gi... - gi\|123996497\|gb\|ABM85850.1\| ribosomal protein S4, X-linked [synthetic construct], gi\|123993841\|gb\|AB... RS4X_MOUSE - 40S ribosomal protein S4, X isoform OS=Mus musculus GN=Rps4x PE=1 SV=2 gi\|109131194 - gi\|109131194\|ref\|XP_001093393.1\| PREDICTED: similar to 40S ribosomal protein S4, X isoform [Macaca m... gi\|90075468 - gi\|90075468\|dbj\|BAE87414.1\| unnamed protein product [Macaca fascicularis] RS4X_RAT - 40S ribosomal protein S4, X isoform OS=Rattus norvegicus GN=Rps4x PE=2 SV=2 RPS4X - ribosomal protein S4, X-linked RS4_BOVIN - 40S ribosomal protein S4 OS=Bos taurus GN=RPS4 PE=2 SV=3 ENSCJAT00000008044 - null	499.0	[0..1]	[259..1]
RS4_CHICK - 40S ribosomal protein S4 OS=Gallus gallus GN=RPS4 PE=2 SV=2	498.0	[0..1]	[259..1]
gi\|57090063 - gi\|57090063\|ref\|XP_537399.1\| PREDICTED: similar to 40S ribosomal protein S4, X isoform [Canis famili...	497.0	[0..1]	[259..1]
gi\|74179765 - gi\|74179765\|dbj\|BAE22507.1\| unnamed protein product [Mus musculus]	497.0	[0..1]	[259..1]
RS4_CRIGR - 40S ribosomal protein S4 OS=Cricetulus griseus GN=RPS4 PE=2 SV=2	497.0	[0..1]	[259..1]
RS4_XENTR - 40S ribosomal protein S4 OS=Xenopus tropicalis GN=rps4 PE=2 SV=3	497.0	[0..1]	[259..1]
gi\|227229 - gi\|227229\|prf\|\|1617101C ribosomal protein S4	496.0	[0..1]	[259..1]
gi\|126722859, gi... - gi\|61835740\|ref\|XP_591678.1\| PREDICTED: similar to 40S ribosomal protein S4, X isoform [Bos taurus],...	496.0	[0..1]	[259..1]

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Predicted Domain #1

Region A:
Residues: [1-67]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVRGPKKHLK RVAAPHHWLL DKLSGTYAPK PSPGPHKARE CLPLIVFLRN RLKYALNGRE  60
   61 VKAILMQ

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [68-164]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RLIKVDGKVR TDSTFPTGFM DVISVDKTGE HFRLVYDIKG RFTVHRITAE EAKYKLCKVK  60
   61 RVQLGAKGVP FLVTHDGRTI RYPDPLIKVN DTIKLNL

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	40.431798
Match:	PF00900.11
Description:	No description for PF00900.11 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.686	N/A	N/A	d.131.1	DNA clamp
View	Download	0.621	N/A	N/A	d.129.3	Bet v1-like
View	Download	0.620	N/A	N/A	b.61.7	Description not found.
View	Download	0.611	N/A	N/A	b.61.1	Avidin/streptavidin
View	Download	0.611	N/A	N/A	b.61.1	Avidin/streptavidin
View	Download	0.576	N/A	N/A	b.61.1	Avidin/streptavidin
View	Download	0.546	N/A	N/A	b.61.4	Quinohemoprotein amine dehydrogenase A chain, domain 3
View	Download	0.542	N/A	N/A	c.30.1	PreATP-grasp domain
View	Download	0.535	N/A	N/A	b.61.4	Quinohemoprotein amine dehydrogenase A chain, domain 3

Predicted Domain #3

Region A:
Residues: [165-262]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ETNKIESFIK FDTSAQVMVT GGRNMGRVGT IVHREHHLGS FEIIHVKDAL DREFATRLSN  60
   61 VFVIGETGKS WISLPKGKGV KLSITEERDR RRALKGLA

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.633	N/A	N/A	b.114.1	N-utilization substance G protein NusG, insert domain
View	Download	0.514	N/A	N/A	d.9.1	Interleukin 8-like chemokines
View	Download	0.471	N/A	N/A	d.14.1	Ribosomal protein S5 domain 2-like
View	Download	0.459	N/A	N/A	b.55.1	PH domain-like
View	Download	0.447	N/A	N/A	b.55.1	PH domain-like

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits