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View Structure Prediction Details

Protein: rps402
Organism: Schizosaccharomyces pombe
Length: 262 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for rps402.

Description E-value Query
Range		 Subject
Range
RS4X_MACFU - 40S ribosomal protein S4, X isoform OS=Macaca fuscata fuscata GN=RPS4X PE=2 SV=3
RS4X_MESAU - 40S ribosomal protein S4, X isoform OS=Mesocricetus auratus GN=RPS4X PE=2 SV=2
RS4X_FELCA - 40S ribosomal protein S4, X isoform OS=Felis catus GN=RPS4X PE=2 SV=2
RS4X_CHLAE - 40S ribosomal protein S4, X isoform OS=Chlorocebus aethiops GN=RPS4X PE=2 SV=3
gi|6519820 - gi|6519820|dbj|BAA87932.1| ribosomal protein S4X (RPS4X) [Macaca fuscata]
gi|1083572 - gi|1083572|pir||A55276 ribosomal protein S4 - western wild mouse
gi|2148029, gi|2... - gi|220321|dbj|BAA01858.1| ribosomal protein S4 [Mesocricetus sp.], gi|2148029|pir||I48169 ribosomal ...
gi|57135 - gi|57135|emb|CAA32427.1| unnamed protein product [Rattus rattus]
gi|114689107, gi... - gi|114689107|ref|XP_001139217.1| PREDICTED: hypothetical protein isoform 3 [Pan troglodytes], gi|114...
gi|149759012, gi... - gi|255653020|ref|NP_001157422.1| ribosomal protein S4 [Equus caballus], gi|149759012|ref|XP_00148806...
gi|123993841, gi... - gi|123996497|gb|ABM85850.1| ribosomal protein S4, X-linked [synthetic construct], gi|123993841|gb|AB...
RS4X_MOUSE - 40S ribosomal protein S4, X isoform OS=Mus musculus GN=Rps4x PE=1 SV=2
gi|109131194 - gi|109131194|ref|XP_001093393.1| PREDICTED: similar to 40S ribosomal protein S4, X isoform [Macaca m...
gi|90075468 - gi|90075468|dbj|BAE87414.1| unnamed protein product [Macaca fascicularis]
RS4X_RAT - 40S ribosomal protein S4, X isoform OS=Rattus norvegicus GN=Rps4x PE=2 SV=2
RPS4X - ribosomal protein S4, X-linked
RS4_BOVIN - 40S ribosomal protein S4 OS=Bos taurus GN=RPS4 PE=2 SV=3
ENSCJAT00000008044 - null
 498.0 [0..1] [259..1]
RS4_CHICK - 40S ribosomal protein S4 OS=Gallus gallus GN=RPS4 PE=2 SV=2
 497.0 [0..1] [259..1]
gi|57090063 - gi|57090063|ref|XP_537399.1| PREDICTED: similar to 40S ribosomal protein S4, X isoform [Canis famili...
 497.0 [0..1] [259..1]
gi|12851918 - gi|12851918|dbj|BAB29207.1| unnamed protein product [Mus musculus]
 497.0 [0..1] [259..1]
RS4_CRIGR - 40S ribosomal protein S4 OS=Cricetulus griseus GN=RPS4 PE=2 SV=2
 497.0 [0..1] [259..1]
RS4_XENTR - 40S ribosomal protein S4 OS=Xenopus tropicalis GN=rps4 PE=2 SV=3
 496.0 [0..1] [259..1]
RS4Y1_MONDO - 40S ribosomal protein S4, Y isoform 1 OS=Monodelphis domestica GN=RPS4Y1 PE=2 SV=3
 496.0 [0..1] [259..1]
gi|227229 - gi|227229|prf||1617101C ribosomal protein S4
 496.0 [0..1] [259..1]

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Predicted Domain #1
Region A:
Residues: [1-67] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVRGPKKHLK RVAAPHHWLL DKLSGTYAPK PSPGPHKARE CLPLIVFLRN RLKYALNGRE  60
   61 VKAILMQ

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

    MCM
Score		 GO
Score		 GO
Term		 SCOP
Match		 SCOP Description
View Download 0.681 N/A N/A a.28.1 ACP-like
View Download 0.633 N/A N/A a.28.1 ACP-like
View Download 0.497 N/A N/A a.28.1 ACP-like
View Download 0.447 N/A N/A a.64.1 Saposin

Predicted Domain #2
Region A:
Residues: [68-190] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RLIQVDGKVR TDSTFPTGFM DVISVEKTGE HFRLVYDIKG RFTVHRITAE EAKYKLCKVK  60
   61 RVQLGAKGVP FLVTHDGRTI RYPDPLIKVN DTIKLNLETN KIESFIKFDT SAQVMVTGGR 120
  121 NMG

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 40.431798
Match: PF00900.11
Description: No description for PF00900.11 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

    MCM
Score		 GO
Score		 GO
Term		 SCOP
Match		 SCOP Description
View Download 0.692 N/A N/A d.129.3 Bet v1-like
View Download 0.659 N/A N/A c.3.1 FAD/NAD(P)-binding domain
View Download 0.659 N/A N/A c.3.1 FAD/NAD(P)-binding domain
View Download 0.598 N/A N/A c.3.1 FAD/NAD(P)-binding domain
View Download 0.598 N/A N/A c.3.1 FAD/NAD(P)-binding domain
View Download 0.571 N/A N/A c.30.1 PreATP-grasp domain
View Download 0.571 N/A N/A c.30.1 PreATP-grasp domain
View Download 0.571 N/A N/A c.3.1 FAD/NAD(P)-binding domain
View Download 0.537 N/A N/A b.55.1 PH domain-like

Predicted Domain #3
Region A:
Residues: [191-262] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RVGTIVHREH HLGSFEIIHV KDALDREFAT RLSNVFVIGE AGKSWISLPK GKGVKLSITE  60
   61 ERDRRRALKG LA

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

    MCM
Score		 GO
Score		 GO
Term		 SCOP
Match		 SCOP Description
View Download 0.771 N/A N/A b.55.1 PH domain-like
View Download 0.767 N/A N/A b.55.1 PH domain-like
View Download 0.633 N/A N/A b.55.1 PH domain-like
View Download 0.606 N/A N/A d.223.1 Polo domain
View Download 0.606 N/A N/A d.223.1 Polo domain
View Download 0.575 N/A N/A b.55.1 PH domain-like
View Download 0.565 N/A N/A b.55.1 PH domain-like
View Download 0.479 N/A N/A b.114.1 N-utilization substance G protein NusG, insert domain
View Download 0.465 N/A N/A b.1.1 Immunoglobulin
View Download 0.433 N/A N/A b.55.1 PH domain-like

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle