YRC Public Data Repository - Protein Structure Prediction

Protein:	rps3002, rps3001
Organism:	Schizosaccharomyces pombe
Length:	61 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for rps3002, rps3001.

Description	E-value	Query Range	Subject Range
gi\|226530702, gi... - gi\|68367548\|ref\|XP_687071.1\| PREDICTED: hypothetical protein [Danio rerio], gi\|226530702\|ref\|NP_0010...	115.0	[0..2]	[61..74]
gi\|69608642 - gi\|69608642\|emb\|CAJ01892.1\| ubiquitin/ribosomal protein S30e fusion protein [Hister sp. APV-2005]	115.0	[0..2]	[61..71]
gi\|115978352, gi... - gi\|115978352\|ref\|XP_001187348.1\| PREDICTED: similar to ubiquitin-like/S30 ribosomal fusion protein [...	112.0	[0..2]	[61..78]
gi\|62083371 - gi\|62083371\|gb\|AAX62410.1\| ribosomal protein S30 [Lysiphlebus testaceipes]	110.0	[0..2]	[60..71]
gi\|56462190 - gi\|56462190\|gb\|AAV91378.1\| hypothetical protein 17 [Lonomia obliqua]	108.0	[0..2]	[61..71]
gi\|15213844 - gi\|15213844\|gb\|AAK92197.1\|AF400225_1 ribosomal protein S30 [Spodoptera frugiperda]	108.0	[0..2]	[61..72]
gi\|61654762 - gi\|61654762\|gb\|AAX48907.1\| S30-ubiquitin-like [Suberites domuncula]	108.0	[0..2]	[61..73]
gi\|50284398 - gi\|50284398\|emb\|CAH04130.1\| ubiquitin/ribosomal protein S30e fusion protein [Papilio dardanus]	108.0	[0..2]	[61..71]
gi\|51011536 - gi\|51011536\|gb\|AAT92177.1\| 40S ribosomal protein S30 [Ixodes pacificus]	107.0	[0..2]	[60..73]

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Predicted Domain #1

Region A:
Residues: [1-61]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKVHGSLAR AGKVKSQTPK VEKQEKPKQP KGRAYKRLLY VRRFVNVTNM VGGKRRMNPS  60
   61 S

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	33.236572
Match:	PF04758.5
Description:	No description for PF04758.5 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits