YRC Public Data Repository - Protein Structure Prediction

Protein:	rps2
Organism:	Schizosaccharomyces pombe
Length:	253 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for rps2.

Description	E-value	Query Range	Subject Range
RS2_ICTPU - 40S ribosomal protein S2 OS=Ictalurus punctatus GN=rps2 PE=2 SV=1	412.0	[0..17]	[252..28]
gi\|2920833 - gi\|2920833\|gb\|AAC04625.1\| ribosomal protein S2 [Rattus norvegicus]	411.0	[0..23]	[252..6]
gi\|82918273, gi\|... - gi\|94383782\|ref\|XP_997963.1\| PREDICTED: hypothetical protein [Mus musculus], gi\|82918273\|ref\|XP_9071...	410.0	[0..28]	[252..54]
gi\|73962610 - gi\|73962610\|ref\|XP_850151.1\| PREDICTED: similar to 40S ribosomal protein S2 isoform 2 [Canis familia...	409.0	[0..28]	[252..60]
gi\|60653393 - gi\|60653393\|gb\|AAX29391.1\| ribosomal protein S2 [synthetic construct]	409.0	[0..28]	[252..54]
RPS2 - ribosomal protein S2 gi\|109108083, gi... - gi\|109108083\|ref\|XP_001095648.1\| PREDICTED: similar to ribosomal protein S2 isoform 5 [Macaca mulatt... gi\|114660380, gi... - gi\|55644549\|ref\|XP_511195.1\| PREDICTED: similar to 40S ribosomal protein S2 (S4) (LLRep3 protein) is... gi\|123997961, gi... - gi\|60656433\|gb\|AAX32780.1\| ribosomal protein S2 [synthetic construct], gi\|123997961\|gb\|ABM86582.1\| r...	408.0	[0..28]	[252..54]

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Predicted Domain #1

Region A:
Residues: [1-253]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAESAPRGFG RGGRGGRGRG RGRRGAKRDE EKEWVPVTKL GRLVKAGKIK SIEEIYLYSL  60
   61 PIKEYQIVDY FLPRLNDEVM KVVPVQKQTR AGQRTRFKAF VVIGDSDGHV GLGIKCAKEV 120
  121 ATAIRGAIIM GKLSIMPIRR GYWGTALGDP HTVPVKVSGK CGSVTVRLVP APRGAGLVAA 180
  181 PVTKRFLQLA GIEDCYTQSR GSTKTLGNFV KAAFAAASLT YGILTPNLWA ERPFGQTPIE 240
  241 EYADILMQTE KKY

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	49.69897
Match:	1s1hE
Description:	Structure of the ribosomal 80S-eEF2-sordarin complex from yeast obtained by docking atomic models for RNA and protein components into a 11.7 A cryo-EM map. This file, 1S1H, Contains 40S subunit. The 60S Ribosomal Subunit Is In File 1S1I.
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits