YRC Public Data Repository - Protein Structure Prediction

Protein:	rps21
Organism:	Schizosaccharomyces pombe
Length:	87 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for rps21.

Description	E-value	Query Range	Subject Range
gi\|190409870 - gi\|190409870\|gb\|EDV13135.1\| ribosomal protein S21A [Saccharomyces cerevisiae RM11-1a] RPS21A - Protein component of the small (40S) ribosomal subunit; nearly identical to Rps21Bp and has similari... RS21A_YEAST - 40S ribosomal protein S21-A OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPS21A PE=1 ... gi\|151941597 - gi\|151941597\|gb\|EDN59960.1\| ribosomal protein S21A [Saccharomyces cerevisiae YJM789]	164.0	[0..1]	[87..1]
RS21_KLULA - 40S ribosomal protein S21 OS=Kluyveromyces lactis GN=RPS21 PE=3 SV=1 RS21_KLULA - 40S ribosomal protein S21 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 12...	164.0	[0..1]	[87..1]
gi\|46107830, gi\|... - gi\|46107830\|ref\|XP_380974.1\| RS21_NEUCR 40S ribosomal protein S21 (CRP7) [Gibberella zeae PH-1], gi\|...	162.0	[0..1]	[87..1]
RS21_ASHGO - 40S ribosomal protein S21 OS=Ashbya gossypii GN=RPS21 PE=3 SV=1 RS21_ASHGO - 40S ribosomal protein S21 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-10...	162.0	[0..1]	[87..1]
gi\|50758757 - gi\|50758757\|ref\|XP_417405.1\| PREDICTED: similar to ribosomal protein S21; 40S ribosomal protein S21 ...	161.0	[0..1]	[83..79]
RS21_CANGA - 40S ribosomal protein S21 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / N... RS21_CANGA - 40S ribosomal protein S21 OS=Candida glabrata GN=RPS21 PE=3 SV=1	161.0	[0..1]	[87..1]
gi\|238879371 - gi\|238879371\|gb\|EEQ43009.1\| conserved hypothetical protein [Candida albicans WO-1] RS21_CANAX - 40S ribosomal protein S21 OS=Candida albicans GN=RPS21 PE=3 SV=1	158.0	[0..1]	[87..1]
RS21_NEUCR - 40S ribosomal protein S21 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 12... RS21_NEUCR - 40S ribosomal protein S21 OS=Neurospora crassa GN=rps-21 PE=3 SV=1	158.0	[0..1]	[87..1]
gi\|39977905, gi\|... - gi\|39977905\|ref\|XP_370340.1\| hypothetical protein MGG_06837 [Magnaporthe grisea 70-15], gb\|EAA55180.... gi\|59802922 - gi\|59802922\|gb\|AAX07666.1\| 40S ribosomal protein S21-like protein [Magnaporthe grisea]	157.0	[0..1]	[87..1]

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Predicted Domain #1

Region A:
Residues: [1-87]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MENEAGQLVD LYVPRKCSAT NRIIQAKDHA SVQINVCAVD AEGRQIPGEK TTYAISGFVR  60
   61 SKGESDDCIN RLTTQDGLLE GVWSYQR

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	65.142668
Match:	PF01249.9
Description:	No description for PF01249.9 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.536	N/A	N/A	c.30.1	PreATP-grasp domain
View	Download	0.524	N/A	N/A	d.58.54	Description not found.
View	Download	0.453	N/A	N/A	d.16.1	FAD-linked reductases, C-terminal domain
View	Download	0.432	N/A	N/A	b.71.1	Glycosyl hydrolase domain
View	Download	0.427	N/A	N/A	d.50.3	PI-Pfui intein middle domain
View	Download	0.411	N/A	N/A	d.50.3	PI-Pfui intein middle domain
View	Download	0.404	N/A	N/A	c.47.1	Thioredoxin-like
View	Download	0.401	N/A	N/A	b.71.1	Glycosyl hydrolase domain
View	Download	0.321	N/A	N/A	d.16.1	FAD-linked reductases, C-terminal domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits