YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: rps1801, rps1802
Organism: Schizosaccharomyces pombe
Length: 152 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for rps1801, rps1802.

Description E-value Query
Range		 Subject
Range
RS18_DANRE - 40S ribosomal protein S18 OS=Danio rerio GN=rps18 PE=2 SV=1
 215.0 [0..1] [152..1]
gi|67083901 - gi|67083901|gb|AAY66885.1| ribosomal protein S18 [Ixodes scapularis]
 215.0 [0..1] [152..1]
RS18_BOVIN - 40S ribosomal protein S18 OS=Bos taurus GN=RPS18 PE=2 SV=3
RPS18 - ribosomal protein S18
tr|G1TPG3|G1TPG3... - pep:novel scaffold:oryCun2:GL018705:1171162:1171620:-1 gene:ENSOCUG00000014699 transcript:ENSOCUT000...
RS18_CANLF - 40S ribosomal protein S18 OS=Canis lupus familiaris GN=RPS18 PE=1 SV=3
gi|197127178 - gi|197127178|gb|ACH43676.1| putative ribosomal protein S18 [Taeniopygia guttata]
gi|433447 - gi|433447|emb|CAA40750.1| ribosomal protein S18 [Rattus rattus]
gi|51980678 - gb|AAH82172.1| Unknown (protein for MGC:98572) [Xenopus laevis]
gi|114606875, gi... - gi|55626404|ref|XP_518400.1| PREDICTED: similar to ribosomal protein [Pan troglodytes], gi|114606875...
RS18_PIG - 40S ribosomal protein S18 OS=Sus scrofa GN=RPS18 PE=1 SV=3
RS18_CAPHI - 40S ribosomal protein S18 OS=Capra hircus GN=RPS18 PE=2 SV=1
ENSCJAT00000042575 - null
gi|149732112 - gi|149732112|ref|XP_001497114.1| PREDICTED: similar to ribosomal protein S18 [Equus caballus]
RS18_MOUSE - 40S ribosomal protein S18 OS=Mus musculus GN=Rps18 PE=1 SV=3
RS18_RAT - 40S ribosomal protein S18 OS=Rattus norvegicus GN=Rps18 PE=1 SV=3
CB373105-4-510-55 - null
 215.0 [0..1] [152..1]
gi|116488056 - gi|116488056|gb|ABJ98610.1| 40S ribosomal protein S18 [Scophthalmus maximus]
gi|60417186 - gi|60417186|emb|CAH57704.1| 40S ribosomal protein S18 [Platichthys flesus]
gi|124300823 - gi|124300823|dbj|BAF45907.1| ribosomal protein S18 [Solea senegalensis]
 215.0 [0..1] [152..1]
RS18_ICTPU - 40S ribosomal protein S18 OS=Ictalurus punctatus GN=rps18 PE=2 SV=1
 214.0 [0..1] [152..1]
gi|166796647, gi... - gi|62858571|ref|NP_001016358.1| ribosomal protein S18 [Xenopus (Silurana) tropicalis], gi|166796647|...
 214.0 [0..1] [152..1]
gi|113415154, gi... - gi|169165938|ref|XP_001720068.1| PREDICTED: hypothetical protein [Homo sapiens], gi|147900901|ref|NP...
 214.0 [0..1] [152..1]
gi|157124077, gi... - gi|94468520|gb|ABF18109.1| ribosomal protein S18 [Aedes aegypti], gi|157124077|ref|XP_001660320.1| 4...
 214.0 [0..1] [152..1]
gi|109097924 - gi|109097924|ref|XP_001085646.1| PREDICTED: similar to ribosomal protein S18 [Macaca mulatta]
 214.0 [0..1] [152..1]
gi|46329492, gi|... - gi|46329492|gb|AAH68873.1| MGC82306 protein [Xenopus laevis], gi|147905776|ref|NP_001084747.1| hypot...
 214.0 [0..1] [152..1]

Back

Predicted Domain #1
Region A:
Residues: [1-152] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLVVPDNFQ HILRLLNTNV DGKVKVMFAM TQIKGVGRRY ANIVCKKADI DMSKRAGELT  60
   61 TEELERIVTI IQNPSQFKIP SWFLNRQKDI NDGKSFQLLA NNVDSKLRED LERLKKIQTH 120
  121 RGLRHALDLR VRGQHTKTTG RRGKTVGVSK KK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 42.0
Match: 1s1hM
Description: Structure of the ribosomal 80S-eEF2-sordarin complex from yeast obtained by docking atomic models for RNA and protein components into a 11.7 A cryo-EM map. This file, 1S1H, Contains 40S subunit. The 60S Ribosomal Subunit Is In File 1S1I.
Matching Structure (courtesy of the PDB):
YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle