YRC Public Data Repository - Protein Structure Prediction

Protein:	rrn11
Organism:	Schizosaccharomyces pombe
Length:	200 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for rrn11.

Description	E-value	Query Range	Subject Range
RRN11_YEAST - RNA polymerase I-specific transcription initiation factor RRN11 OS=Saccharomyces cerevisiae (strain ... RRN11 - Component of the core factor (CF) rDNA transcription factor complex; CF is required for transcriptio...	206.0	[0..5]	[166..180]
gi\|44981423 - gi\|44981423\|gb\|AAS51208.1\| ACL020Wp [Ashbya gossypii ATCC 10895] gi\|44981423, gi\|... - gi\|45185668\|ref\|NP_983384.1\| ACL020Wp [Ashbya gossypii ATCC 10895], gi\|44981423\|gb\|AAS51208.1\| ACL02...	200.0	[0..20]	[176..233]
gi\|49097196, gi\|... - gi\|67539502\|ref\|XP_663525.1\| hypothetical protein AN5921.2 [Aspergillus nidulans FGSC A4], ref\|XP_41...	193.0	[0..18]	[180..97]
gi\|5901751 - gi\|5901751\|gb\|AAD55396.1\| RNA polymerase I-specific transcription initiation factor [Candida glabrat...	193.0	[0..10]	[166..172]
gi\|50291587, gi\|... - gi\|50291587\|ref\|XP_448226.1\| unnamed protein product [Candida glabrata], gi\|49527537\|emb\|CAG61177.1\|... gi\|49527537 - gi\|49527537\|emb\|CAG61177.1\| unnamed protein product [Candida glabrata]	189.0	[0..10]	[166..172]
orf19.8337 - orf19.718 CGDID:CAL0001746 Assembly 19, Contig19-20070 (13745, 15814) CDS, translated using codon ta... gi\|46434578, gi\|... - gi\|68485965\|ref\|XP_713101.1\| potential RNA Pol I transcription factor subunit Rrn11 [Candida albican...	177.0	[0..4]	[166..205]
gi\|50305001, gi\|... - gi\|50305001\|ref\|XP_452458.1\| unnamed protein product [Kluyveromyces lactis], gi\|49641591\|emb\|CAH0130... gi\|49641591 - gi\|49641591\|emb\|CAH01309.1\| KLLA0C05852p [Kluyveromyces lactis]	140.0	[0..8]	[182..165]
gi\|42545995, gi\|... - gi\|46110120\|ref\|XP_382118.1\| hypothetical protein FG01942.1 [Gibberella zeae PH-1], gi\|42545995\|gb\|E...	135.0	[0..27]	[145..101]
gi\|39976089, gi\|... - gi\|39976089\|ref\|XP_369435.1\| hypothetical protein MGG_06029 [Magnaporthe grisea 70-15], gb\|EAA52901....	125.0	[0..39]	[157..126]

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Predicted Domain #1

Region A:
Residues: [1-200]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFSPCTVKEK RSTLRSVAPN PESSVIPPIP LPSRRYKTRH IDALCSLMHL CLLRKDYPRA  60
   61 SRAFSLLLRS KSVDISKLWN IGLEILNKVN PEASSEYMER LIARYPARPS INNSYPNRNA 120
  121 EHFFPAYIML LIQRQEYNKA MKLLDEYLLL PPYNQNPALH EYSGMLCFEL AKEEASESER 180
  181 TKWIEKAKYN FSNAGIDVEL

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.02
Match:	2r5sA
Description:	No description for 2r5sA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits