| Protein: | rpo41 |
| Organism: | Schizosaccharomyces pombe |
| Length: | 1120 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for rpo41.
| Description | E-value | Query Range |
Subject Range |
|
|
1045.0 | [0..238] | [1120..167] |
|
|
1019.0 | [0..242] | [1120..129] |
|
|
1012.0 | [0..191] | [1120..108] |
|
|
1009.0 | [0..242] | [1120..18] |
|
|
1004.0 | [0..171] | [1120..107] |
|
|
1001.0 | [0..242] | [1120..168] |
|
|
998.0 | [0..181] | [1120..116] |
|
Region A: Residues: [1-203] |
1 11 21 31 41 51
| | | | | |
1 MPIEAYEPYK NELKSKIGKD FIIDLSYKSG TASLFEACVY NGDFLRSKQL LKSFIDHNKG 60
61 DKILLPMINL YIREIIQRGS FELTDVLSNA KELLQQARLN GDSLTYALLC QASLNPTQRQ 120
121 LGLPVLHELI HNWRSANGKV IDILMHESVF SPEEVKLIMD QLNIPINNFT PSQLQLLGIT 180
181 NSTIVGESEN GKDQNGDSSL KEK
|
| Detection Method: |  |
| Confidence: | 3.39794 |
| Match: | 2fo7A |
| Description: | Crystal structure of an 8 repeat consensus TPR superhelix (trigonal crystal form) |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [204-1120] |
1 11 21 31 41 51
| | | | | |
1 QPDVETTVTK SANLNALRSS LSSLLTESID LPIDEVSLEF GNQGDTFNLA RQKLLEKSAI 60
61 LSAAEVWKSE HESVLNRGNL QVPKNVSSLF YSWYVQLEQL FKEEISLIDD LALNESLDKK 120
121 NDRLIYGPFL KLLSSKKLAA LTIMEVAQLS TNPRYDRGAR VTTLLGGLGR SFEREFLSEQ 180
181 IQRQEKNKSY KDKKRLKELF NDPRKFRQAV KNLRLSNTRD NIVLNPSVDS WPSAIVMKVG 240
241 SVALCLLLSV AKIEVTAKDL STGGILKQEV AAFVHTYQYS NGRKVGMIVP HVEFYKLLSR 300
301 DIEKPHLHPQ LLPMLVTPKP WTSWIDGGYY YSRQPLVRLK GALEQVDYLM KASENGQLDE 360
361 LFKAVSSLGK VSWRINQRLF NVLIRIWNSG EKFLSIPPRE VKCDMPPYPK NSINPRDKVI 420
421 WHTRRKELAA LKTGAHSQRC DFNYKLEIAR AFLNEKFYFP HSLDFRGRAY PLSSHLHHVS 480
481 NDVCRGLLEF STGKPLGPKG LNWLKVHLAN LFGISKKDFA TRQAFVDDNM QEVFDSADRP 540
541 LDGNKWWSKA DDPFQALAAC FEIAEAVRSG DHESYISHIP IQQDGTCNGL QHYAALGGDI 600
601 EGAKQVNLWP SDHPSDVYEA VAEIVRGFLK KDAEAGDEMA NFLKDKVTRS VVKPTVMTNV 660
661 YGVTYVGARK QISEKLENID GMEKLKVADY ANYLTKKVFE ALRSLFTQAH EIQDWLSACC 720
721 NLITHSLPAD YIKEGIKDEL TPVVWTTLLN LPIVQPYRNY KSRQIRTNLQ TVFIEERDRT 780
781 ATVQPHKQAT AFPPNFIHSL DATHMFMTCL KCSEQNINFA AVHDSYWTHA CDVDQMNSLL 840
841 REAFVLLHSN NIMERLKQEF EERYKGFLVS KKAIKANDED LKAKFGNKSY IPLEFPPLPA 900
901 RGALDLKKVL ESKYFFS
|
| Detection Method: | |
| Confidence: | 1000.0 |
| Match: | 2pi4A |
| Description: | No description for 2pi4A was found. |
| Term | Confidence | Notes |
| nucleotidyltransferase activity | 2.80387066605111 | bayes_pls_golite062009 |
| DNA-directed DNA polymerase activity | 2.6108181024665 | bayes_pls_golite062009 |
| DNA polymerase activity | 2.44559689391189 | bayes_pls_golite062009 |
| DNA-directed RNA polymerase activity | 2.0559247272131 | bayes_pls_golite062009 |
| RNA polymerase activity | 2.0559247272131 | bayes_pls_golite062009 |
| binding | 1.92492422240469 | bayes_pls_golite062009 |
| DNA binding | 1.87721092677049 | bayes_pls_golite062009 |
| transferase activity, transferring phosphorus-containing groups | 1.77244128755319 | bayes_pls_golite062009 |
| nucleic acid binding | 1.64235873416087 | bayes_pls_golite062009 |
| transferase activity | 1.48796361930482 | bayes_pls_golite062009 |
| chromatin binding | 1.32386525961438 | bayes_pls_golite062009 |
| catalytic activity | 1.04899053677564 | bayes_pls_golite062009 |
| protein binding | 0.561579019896047 | bayes_pls_golite062009 |
| 3'-5' exonuclease activity | 0.0700154911930899 | bayes_pls_golite062009 |
