YRC Public Data Repository - Protein Structure Prediction

Protein:	rpn11
Organism:	Schizosaccharomyces pombe
Length:	308 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for rpn11.

Description	E-value	Query Range	Subject Range
gi\|2505940, gi\|1... - gi\|2505940\|emb\|CAA73514.1\| 26S proteasome, non-ATPase subunit [Mus musculus], gi\|10946952\|ref\|NP_067...	409.0	[0..1]	[308..1]
gi\|195576684, gi... - gi\|195576684\|ref\|XP_002078205.1\| GD22663 [Drosophila simulans], gi\|194190214\|gb\|EDX03790.1\| GD22663 ... gi\|195472773, gi... - gi\|195472773\|ref\|XP_002088673.1\| Rpn11 [Drosophila yakuba], gi\|194174774\|gb\|EDW88385.1\| Rpn11 [Droso... gi\|220957124, gi... - gi\|220957124\|gb\|ACL91105.1\| Rpn11-PA [synthetic construct], gi\|220947746\|gb\|ACL86416.1\| Rpn11-PA [sy... gi\|195342656, gi... - gi\|195342656\|ref\|XP_002037916.1\| GM18036 [Drosophila sechellia], gi\|194132766\|gb\|EDW54334.1\| GM18036... gi\|190660634, gi... - gi\|194856517\|ref\|XP_001968767.1\| GG24318 [Drosophila erecta], gi\|190660634\|gb\|EDV57826.1\| GG24318 [D... Rpn11-PA - The gene Rpn11 is referred to in FlyBase by the symbol Dmel\Rpn11 (CG18174, FBgn0028694). It is a pr...	403.0	[0..1]	[308..1]
gi\|94469152, gi\|... - gi\|94469152\|gb\|ABF18425.1\| 26S proteasome regulatory complex subunit RPN11 [Aedes aegypti], gi\|1571...	402.0	[0..1]	[308..1]
gi\|125984402, gi... - gi\|54644283\|gb\|EAL33024.1\| GA14824 [Drosophila pseudoobscura pseudoobscura], gi\|125984402\|ref\|XP_001... gi\|54644283\|gb\|E... - GA14824-PA [Drosophila pseudoobscura], GA14824 [Drosophila pseudoobscura pseudoobscura]	402.0	[0..1]	[308..1]
gi\|109468228 - gi\|109468228\|ref\|XP_001059730.1\| PREDICTED: similar to 26S proteasome non-ATPase regulatory subunit ...	402.0	[0..15]	[308..95]
AGAP008617-PA - 26S proteasome regulatory subunit N11\|protein_coding\|3R:13715334:13716447:1\|gene:AGAP008617 gi\|58386372, gi\|... - gi\|58386372\|ref\|XP_314713.2\| AGAP008617-PA [Anopheles gambiae str. PEST], gi\|55239804\|gb\|EAA10169.2\|...	399.0	[0..1]	[308..1]
gi\|91088291 - gi\|91088291\|ref\|XP_966426.1\| PREDICTED: similar to 26S proteasome non-ATPase regulatory subunit 14 i...	399.0	[0..1]	[308..1]
gi\|87248555, gi\|... - gi\|87248555\|gb\|ABD36330.1\| 26S proteasome non-ATPase regulatory subunit 14 [Bombyx mori], gi\|1140526...	398.0	[0..1]	[308..1]
gi\|92870181 - gi\|92870181\|gb\|ABE79516.1\| Mov34-1; Flagellar motor switch protein FliG-like [Medicago truncatula]	397.0	[0..1]	[308..1]
gi\|66552230 - gi\|66552230\|ref\|XP_393559.2\| PREDICTED: similar to Rpn11 CG18174-PA isoform 1 [Apis mellifera]	393.0	[0..1]	[308..1]

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Predicted Domain #1

Region A:
Residues: [1-208]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESLQRLLQG ARMGTGMMGD QPLVDNSECV YISSLALLKM LRHGRHGTPM EVMGLMLGEF  60
   61 VDDFTVRVVD VFAMPQSGTG VSVEAVDPVF QKNMMDMLKQ TGRPEMVVGW YHSHPGFGCW 120
  121 LSSVDINTQQ SFEQLTPRAV AVVVDPIQSV KGKVVIDAFR LINPSTLMMG QEPRQTTSNL 180
  181 GHINKPSIQA LIHGLGRHYY SLRINYKK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	37.0
Match:	2o95A
Description:	No description for 2o95A was found.

Predicted Domain #2

Region A:
Residues: [209-308]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TELEEIMLLN LHKQPWAHGL LLENFNSAAE KNHASIDKMK SLSEQYTERV QNEVTLSPEQ  60
   61 LRIQYVGKQD PKKHLDAEVQ KCIDNNISSM LACMLDSVAF

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits