YRC Public Data Repository - Protein Structure Prediction

Protein:	rpc11
Organism:	Schizosaccharomyces pombe
Length:	109 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for rpc11.

Description	E-value	Query Range	Subject Range
gi\|46438863, gi\|... - gi\|68477862\|ref\|XP_717083.1\| hypothetical protein CaO19.12820 [Candida albicans SC5314], gi\|68477699... orf19.12820, orf... - RPC11 CGDID:CAL0004345 Assembly 19, Contig19-10225 (127260, 127595) CDS, translated using codon tabl...	139.0	[0..1]	[109..2]
gi\|88182107, gi\|... - gi\|88182107\|gb\|EAQ89575.1\| conserved hypothetical protein [Chaetomium globosum CBS 148.51], gi\|11619...	136.0	[0..1]	[109..3]
gi\|38567336 - gi\|38567336\|emb\|CAE76624.1\| probable DNA-directed RNA polymerase III subunit C11 [Neurospora crassa]	135.0	[0..3]	[109..5]
gi\|44985907 - gi\|44985907\|gb\|AAS54518.1\| AGR029Wp [Ashbya gossypii ATCC 10895] gi\|45201124, gi\|... - gi\|45201124\|ref\|NP_986694.1\| AGR029Wp [Ashbya gossypii ATCC 10895], gi\|44985907\|gb\|AAS54518.1\| AGR02...	134.0	[0..1]	[109..2]
gi\|38100739, gi\|... - gi\|86196830\|gb\|EAQ71468.1\| hypothetical protein MGCH7_ch7g875 [Magnaporthe grisea 70-15], gi\|3997121...	131.0	[0..1]	[109..2]
gi\|49645048, gi\|... - gi\|49645048\|emb\|CAG98620.1\| KLLA0F18568p [Kluyveromyces lactis], gi\|38636481\|emb\|CAD58583.1\| RNA pol... gi\|49645048, gi\|... - gi\|50311767\|ref\|XP_455912.1\| unnamed protein product [Kluyveromyces lactis], gi\|49645048\|emb\|CAG9862...	129.0	[0..1]	[109..2]
gi\|73959879 - gi\|73959879\|ref\|XP_854405.1\| PREDICTED: similar to DNA-directed RNA polymerases III 12.5 kDa polypep...	126.0	[0..1]	[108..26]
gi\|42548569, gi\|... - gi\|46128347\|ref\|XP_388727.1\| hypothetical protein FG08551.1 [Gibberella zeae PH-1], gi\|42548569\|gb\|E...	126.0	[0..1]	[109..2]
gi\|190404984 - gi\|190404984\|gb\|EDV08251.1\| DNA-directed RNA polymerases III 12.5 kDa polypeptide [Saccharomyces cer... RPC11 - RNA polymerase III subunit C11; mediates pol III RNA cleavage activity and is important for terminat... ORFP:3914 - YDR045C, Contig c130 7458-7790 reverse complement RPC10_YEAST - DNA-directed RNA polymerase III subunit RPC10 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288... gi\|151942036 - gi\|151942036\|gb\|EDN60392.1\| RNA polymerase C [Saccharomyces cerevisiae YJM789]	125.0	[0..1]	[109..2]
gi\|50424117, gi\|... - gi\|50424117\|ref\|XP_460643.1\| hypothetical protein DEHA0F07216g [Debaryomyces hansenii CBS767], gi\|49...	125.0	[0..1]	[109..2]

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Predicted Domain #1

Region A:
Residues: [1-109]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQFCPTCGNH LIVAVDEEGR NAFDCRTCPY HFPISTFLYS RHEFAQKEVD DVLGGEEAFE  60
   61 SNQQTEVTCE NTKCDNNRAY FFQLQIRSAD EPMSTFYRCT KCKFQWREN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	24.522879
Match:	1i3qI
Description:	RBP9 subunit of RNA polymerase II
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits