YRC Public Data Repository - Protein Structure Prediction

Protein:	rpc19
Organism:	Schizosaccharomyces pombe
Length:	125 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for rpc19.

Description	E-value	Query Range	Subject Range
gi\|73957788 - gi\|73957788\|ref\|XP_546937.2\| PREDICTED: similar to RAS p21 protein activator 4 [Canis familiaris]	162.0	[0..7]	[118..992]
gi\|109066247 - gi\|109066247\|ref\|XP_001114618.1\| PREDICTED: similar to DNA-directed RNA polymerase II subunit J (DNA...	154.0	[0..7]	[118..75]
gi\|62088376 - gi\|62088376\|dbj\|BAD92635.1\| MGC13098 protein variant [Homo sapiens]	152.0	[0..7]	[109..23]
gi\|33359678 - gi\|33359678\|gb\|AAP97076.1\| RNA polymerase II subunit [Branchiostoma belcheri]	150.0	[0..7]	[121..1]
RPB11_MOUSE - DNA-directed RNA polymerase II subunit RPB11 OS=Mus musculus GN=Polr2j PE=1 SV=1	147.0	[0..7]	[118..1]
gi\|91090444 - gi\|91090444\|ref\|XP_966925.1\| PREDICTED: similar to DNA-directed RNA polymerase II 13.3 kDa polypepti...	146.0	[0..7]	[118..1]
gi\|47211212 - gi\|47211212\|emb\|CAF90169.1\| unnamed protein product [Tetraodon nigroviridis]	146.0	[0..7]	[118..1]

Back

Predicted Domain #1

Region A:
Residues: [1-125]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAMTDVTDP SSVAMESATE KIIILPGHSA DLTSVTFQIQ KEDHTLGNSL RYVIMKNPEV  60
   61 EFCGYSIPHP SEAKMNFRIQ TAPSTTAVDV LRKGLDDLID LCDAVTEKFT EQLPRDTSTT 120
  121 MEVDG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	31.522879
Match:	1i3qK
Description:	RPB11
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits