YRC Public Data Repository - Protein Structure Prediction

Protein:	rpa12
Organism:	Schizosaccharomyces pombe
Length:	119 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for rpa12.

Description	E-value	Query Range	Subject Range
gi\|73999378 - gi\|73999378\|ref\|XP_535071.2\| PREDICTED: similar to transcription elongation factor A (SII) 1 [Canis ...	133.0	[0..15]	[116..338]
gi\|114620141 - gi\|114620141\|ref\|XP_001151630.1\| PREDICTED: transcription elongation factor A 1 isoform 4 [Pan trogl...	129.0	[0..15]	[116..192]
gi\|57530393, gi\|... - gi\|57530393\|ref\|NP_001006387.1\| transcription elongation factor A 1 [Gallus gallus], gi\|53136812\|emb...	128.0	[0..14]	[116..199]
gi\|61365803 - gi\|61365803\|gb\|AAX42766.1\| transcription elongation factor A 1 [synthetic construct]	127.0	[0..15]	[116..197]
gi\|47122876, gi\|... - pir\|\|S72364 transcription elongation factor TFIIS.oA - African clawed frog, gi\|47122876\|gb\|AAH70555...	126.0	[0..14]	[116..198]
gi\|339443 - gi\|339443\|gb\|AAA61138.1\| transcription elongation factor SII	126.0	[0..15]	[116..197]

Back

Predicted Domain #1

Region A:
Residues: [1-119]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAIGSLIFC SECGNLLEST TAQWTTCDQC QSVYPSEQFA NLVVETKSSA SAFPSALKLK  60
   61 HSIVQVESQK EEAATIEEKC PKCGNDHMTF HTLQLRSADE GSTVFYECPR CAYKFSTNN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	20.0
Match:	1i3qI
Description:	RBP9 subunit of RNA polymerase II
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits