YRC Public Data Repository - Protein Structure Prediction

Protein:	rox3
Organism:	Schizosaccharomyces pombe
Length:	138 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for rox3.

Description	E-value	Query Range	Subject Range
gi\|39972287, gi\|... - gi\|39972287\|ref\|XP_367534.1\| hypothetical protein MGG_07445 [Magnaporthe grisea 70-15], gb\|EAA53168....	111.0	[0..6]	[72..99]
MED19_ASHGO - Mediator of RNA polymerase II transcription subunit 19 OS=Ashbya gossypii GN=ROX3 PE=3 SV=1 MED19_ASHGO - Mediator of RNA polymerase II transcription subunit 19 OS=Ashbya gossypii (strain ATCC 10895 / CBS 1...	107.0	[0..2]	[69..8]
MED19_CHAGB - Mediator of RNA polymerase II transcription subunit 19 OS=Chaetomium globosum GN=ROX3 PE=3 SV=3 MED19_CHAGB - Mediator of RNA polymerase II transcription subunit 19 OS=Chaetomium globosum (strain ATCC 6205 / CB...	102.0	[0..6]	[96..99]
MED19_YEAST - Mediator of RNA polymerase II transcription subunit 19 OS=Saccharomyces cerevisiae (strain ATCC 2045... ROX3 - Subunit of the RNA polymerase II mediator complex; associates with core polymerase subunits to form ... gi\|151946306 - gi\|151946306\|gb\|EDN64528.1\| mediator complex subunit [Saccharomyces cerevisiae YJM789] gi\|190408913 - gi\|190408913\|gb\|EDV12178.1\| RNA polymerase II mediator complex subunit 19 [Saccharomyces cerevisiae ... gi\|207347926 - gi\|207347926\|gb\|EDZ73946.1\| YBL093Cp-like protein [Saccharomyces cerevisiae AWRI1631]	101.0	[0..3]	[69..9]
MED19_KLULA - Mediator of RNA polymerase II transcription subunit 19 OS=Kluyveromyces lactis GN=ROX3 PE=3 SV=1 MED19_KLULA - Mediator of RNA polymerase II transcription subunit 19 OS=Kluyveromyces lactis (strain ATCC 8585 / C...	97.0	[0..2]	[66..10]
gi\|32414869, gi\|... - gi\|32414869\|ref\|XP_327914.1\| predicted protein [Neurospora crassa], gi\|28917828\|gb\|EAA27516.1\| predi... gi\|85081602 - gi\|85081602\|ref\|XP_956752.1\| hypothetical protein [Neurospora crassa OR74A]	95.0	[0..12]	[72..128]
gi\|38566841 - gi\|38566841\|emb\|CAE76147.1\| hypothetical protein [Neurospora crassa]	95.0	[0..12]	[72..152]
MED19_CANGA - Mediator of RNA polymerase II transcription subunit 19 OS=Candida glabrata (strain ATCC 2001 / CBS 1... MED19_CANGA - Mediator of RNA polymerase II transcription subunit 19 OS=Candida glabrata GN=ROX3 PE=3 SV=1	95.0	[0..4]	[69..7]
gi\|46124867, gi\|... - gi\|46124867\|ref\|XP_386987.1\| hypothetical protein FG06811.1 [Gibberella zeae PH-1], gi\|42553900\|gb\|E...	94.0	[0..6]	[72..96]

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Predicted Domain #1

Region A:
Residues: [1-138]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAQAPEYHYV GSVDYQPTRP SAHQNLIELY GLTELAKKVG RVDEFGNKRK MRRSYKAYIQ  60
   61 DLPGYNEILR DNTIKQWLTN PIREEVPIDI EFLHHVFSVE PGIIPGFNPK VFGLEDDVVM 120
  121 GNVSRDSSQP RSPSRRKK

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	48.619789
Match:	PF08633.1
Description:	No description for PF08633.1 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits