YRC Public Data Repository - Protein Structure Prediction

Protein:	SPBC21C3.04c
Organism:	Schizosaccharomyces pombe
Length:	108 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC21C3.04c.

Description	E-value	Query Range	Subject Range
gi\|45725013 - gi\|45725013\|emb\|CAG23918.1\| LIN1 protein [Cicer arietinum]	96.0	[0..30]	[107..42]
gi\|55241846, gi\|... - gi\|58382507\|ref\|XP_311987.2\| ENSANGP00000011149 [Anopheles gambiae str. PEST], gi\|55241846\|gb\|EAA075...	86.0	[0..35]	[108..44]
gi\|79313225, gi\|... - gi\|79313225\|ref\|NP_001030692.1\| structural constituent of ribosome [Arabidopsis thaliana], gi\|298243...	86.0	[0..45]	[107..80]
RM34_MOUSE - 39S ribosomal protein L34, mitochondrial OS=Mus musculus GN=Mrpl34 PE=1 SV=1	85.0	[0..47]	[108..31]
gi\|20521263, gi\|... - gi\|50901796\|ref\|XP_463331.1\| B1129G05.2 [Oryza sativa (japonica cultivar-group)], gi\|215768189\|dbj\|B...	85.0	[0..45]	[107..77]
MRPL34 - mitochondrial ribosomal protein L34 ENSPTRT00000056231 - null	81.0	[0..47]	[108..31]
RM34_MACFA - 39S ribosomal protein L34, mitochondrial OS=Macaca fascicularis GN=MRPL34 PE=3 SV=1	81.0	[0..47]	[108..31]
gi\|21325872 - gi\|21325872\|dbj\|BAC00493.1\| Ribosomal protein L34 [Corynebacterium glutamicum ATCC 13032]	81.0	[0..39]	[107..46]
gi\|114675984 - gi\|114675984\|ref\|XP_001161111.1\| PREDICTED: hypothetical protein [Pan troglodytes]	80.0	[0..49]	[105..60]

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Predicted Domain #1

Region A:
Residues: [1-108]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMFMQQFRNL LHPAMKGARN ISILAGGGTM RGFPTRNPFN TATLYSSLPT MNIFGQMQQV  60
   61 RWKTYGNEYQ PSNRKRKRKH GFLSRIRSVN GRRVLRDRRQ KGRMYLSH

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.311	a.45.1	Glutathione S-transferase (GST), C-terminal domain
View	Download	0.287	a.118.9	ENTH/VHS domain
View	Download	0.245	a.80.1	DNA polymerase III clamp loader subunits, C-terminal domain
View	Download	0.224	a.24.11	Bacterial GAP domain
View	Download	0.223	a.24.11	Bacterial GAP domain
View	Download	0.223	a.80.1	DNA polymerase III clamp loader subunits, C-terminal domain
View	Download	0.206	a.182.1	GatB/YqeY domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits