YRC Public Data Repository - Protein Structure Prediction

Protein:	rpp102
Organism:	Schizosaccharomyces pombe
Length:	110 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for rpp102.

Description	E-value	Query Range	Subject Range
gi\|10177851, gi\|... - gi\|67633816\|gb\|AAY78832.1\| putative 60S acidic ribosomal protein P1 [Arabidopsis thaliana], gi\|15238...	126.0	[0..1]	[110..1]
gi\|11141354 - gi\|11141354\|emb\|CAC16109.1\| acidic ribosomal protein 1 [Rana esculenta]	109.0	[0..2]	[110..3]
gi\|38086394, gi\|... - gi\|94408796\|ref\|XP_993025.1\| PREDICTED: similar to 60S acidic ribosomal protein P1 isoform 2 [Mus mu...	105.0	[0..2]	[110..3]
gi\|4239713 - gi\|4239713\|emb\|CAA72658.1\| acidic ribosomal protein [Ceratitis capitata]	102.0	[0..2]	[110..3]
gi\|114654113, gi... - gi\|114654113\|ref\|XP_001163471.1\| PREDICTED: similar to ribosomal protein P1 isoform 2 [Pan troglodyt...	101.0	[0..2]	[110..3]
gi\|109084446 - gi\|109084446\|ref\|XP_001095290.1\| PREDICTED: similar to 60S acidic ribosomal protein P1 [Macaca mulat...	101.0	[0..2]	[110..138]
gi\|539412, gi\|227678 - gi\|539412\|pir\|\|A53221 acidic ribosomal protein P1 - hydromedusa (Polyorchis penicillatus), gi\|227678...	100.0	[0..2]	[110..5]
gi\|66546799 - gi\|66546799\|ref\|XP_624781.1\| PREDICTED: similar to 60S acidic ribosomal protein P1 (RP21C) (Acidic r...	100.0	[0..3]	[110..4]
RLA1_OSCBR - 60S acidic ribosomal protein P1 OS=Oscheius brevesophaga GN=rpl-21 PE=3 SV=1 RLA1_OSCTI - 60S acidic ribosomal protein P1 OS=Oscheius tipulae GN=rpl-21 PE=3 SV=1	100.0	[0..2]	[110..3]

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Predicted Domain #1

Region A:
Residues: [1-110]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSASELATSY SALILADEGI EITSDKLLSL TKAANVDVEP IWATIFAKAL EGKDLKELLL  60
   61 NIGSAAAAPA AGGAGAPAAA AGGEAAAEEQ KEEAKEEEES DEDMGFGLFD

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.06
Match:	1jj2G
Description:	Ribosomal protein L10
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits