YRC Public Data Repository - Protein Structure Prediction

Protein:	rpp201
Organism:	Schizosaccharomyces pombe
Length:	110 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for rpp201.

Description	E-value	Query Range	Subject Range
gi\|39582094, gi\|... - gi\|39582094\|emb\|CAE63737.1\| Hypothetical protein CBG08266 [Caenorhabditis briggsae], gi\|187032828\|em... gi\|157747115 - gi\|157747115\|ref\|XP_001668652.1\| Hypothetical protein CBG08266 [Caenorhabditis briggsae AF16]	118.0	[0..1]	[110..1]
gi\|77416939 - gi\|77416939\|gb\|ABA81865.1\| unknown [Solanum tuberosum]	110.0	[0..1]	[72..1]
gi\|56757219 - gi\|56757219\|gb\|AAW26781.1\| SJCHGC01207 protein [Schistosoma japonicum]	110.0	[0..1]	[110..1]
gi\|110765226, gi... - ref\|XP_392860.1\| similar to 60S acidic ribosomal protein P2 [Apis mellifera], gi\|110765226\|ref\|XP_00...	109.0	[0..1]	[110..1]
gi\|50800573 - gi\|50800573\|ref\|XP_424134.1\| PREDICTED: hypothetical protein [Gallus gallus]	108.0	[0..1]	[110..1]
RLA2_BRUMA - 60S acidic ribosomal protein P2 OS=Brugia malayi GN=rpp-2 PE=3 SV=1	107.0	[0..1]	[110..2]
rla-2 - status:Confirmed UniProt:Q9U1X9 protein_id:CAB60595.1	105.0	[0..1]	[110..1]

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Predicted Domain #1

Region A:
Residues: [1-110]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKYLAAYLLL TVGGKDSPSA SDIESVLSTV GIEAESERIE TLINELNGKD IDELIAAGNE  60
   61 KLATVPTGGA ASAAPAAAAG GAAPAAEEAA KEEAKEEEES DEDMGFGLFD

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	34.744727
Match:	PF00428.10
Description:	No description for PF00428.10 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits