YRC Public Data Repository - Protein Structure Prediction

Protein:	rpp101
Organism:	Schizosaccharomyces pombe
Length:	109 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for rpp101.

Description	E-value	Query Range	Subject Range
gi\|10177851, gi\|... - gi\|67633816\|gb\|AAY78832.1\| putative 60S acidic ribosomal protein P1 [Arabidopsis thaliana], gi\|15238...	127.0	[0..1]	[109..1]
gi\|11141354 - gi\|11141354\|emb\|CAC16109.1\| acidic ribosomal protein 1 [Rana esculenta]	108.0	[0..2]	[109..3]
gi\|38086394, gi\|... - gi\|94408796\|ref\|XP_993025.1\| PREDICTED: similar to 60S acidic ribosomal protein P1 isoform 2 [Mus mu...	103.0	[0..2]	[109..3]
gi\|539412, gi\|227678 - gi\|539412\|pir\|\|A53221 acidic ribosomal protein P1 - hydromedusa (Polyorchis penicillatus), gi\|227678...	102.0	[0..2]	[109..5]
gi\|4239713 - gi\|4239713\|emb\|CAA72658.1\| acidic ribosomal protein [Ceratitis capitata]	102.0	[0..2]	[109..3]
gi\|109084446 - gi\|109084446\|ref\|XP_001095290.1\| PREDICTED: similar to 60S acidic ribosomal protein P1 [Macaca mulat...	102.0	[0..2]	[109..138]
RLA1_OSCBR - 60S acidic ribosomal protein P1 OS=Oscheius brevesophaga GN=rpl-21 PE=3 SV=1 RLA1_OSCTI - 60S acidic ribosomal protein P1 OS=Oscheius tipulae GN=rpl-21 PE=3 SV=1	101.0	[0..2]	[109..3]
gi\|114654113, gi... - gi\|114654113\|ref\|XP_001163471.1\| PREDICTED: similar to ribosomal protein P1 isoform 2 [Pan troglodyt...	101.0	[0..2]	[109..3]
RLA1_ALTAL - 60S acidic ribosomal protein P1 OS=Alternaria alternata GN=ALTA12 PE=1 SV=1	100.0	[0..1]	[109..1]

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Predicted Domain #1

Region A:
Residues: [1-109]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSASELATSY SALILADEGI EITSDKLLSL TKAANVDVEP IWATIFAKAL EGKDLKELLL  60
   61 NIGSGAGAAP VAGGAAAPAA ADGEAPAEEK EEAKEEEESD EDMGFGLFD

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	33.431798
Match:	PF00428.10
Description:	No description for PF00428.10 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.567	N/A	N/A	a.80.1	DNA polymerase III clamp loader subunits, C-terminal domain
View	Download	0.502	N/A	N/A	a.80.1	DNA polymerase III clamp loader subunits, C-terminal domain
View	Download	0.358	N/A	N/A	a.4.6	C-terminal effector domain of the bipartite response regulators
View	Download	0.356	N/A	N/A	a.4.6	C-terminal effector domain of the bipartite response regulators
View	Download	0.341	N/A	N/A	a.4.1	Homeodomain-like
View	Download	0.320	N/A	N/A	a.118.8	TPR-like
View	Download	0.313	N/A	N/A	a.118.8	TPR-like
View	Download	0.308	N/A	N/A	a.80.1	DNA polymerase III clamp loader subunits, C-terminal domain
View	Download	0.278	N/A	N/A	a.46.1	Methionine synthase domain
View	Download	0.270	N/A	N/A	a.74.1	Cyclin-like

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits