YRC Public Data Repository - Protein Structure Prediction

Protein:	rpl3401
Organism:	Schizosaccharomyces pombe
Length:	112 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for rpl3401.

Description	E-value	Query Range	Subject Range
gi\|125776087, gi... - gi\|54638906\|gb\|EAL28308.1\| GA19343-PA [Drosophila pseudoobscura], gi\|125776087\|ref\|XP_001359164.1\| G...	177.0	[0..1]	[110..1]
gi\|70989179, gi\|... - gi\|70989179\|ref\|XP_749439.1\| ribosomal protein L34 protein [Aspergillus fumigatus Af293], gi\|6684707... gi\|159128850 - gi\|159128850\|gb\|EDP53964.1\| ribosomal protein L34 protein, putative [Aspergillus fumigatus A1163]	174.0	[0..12]	[111..88]
gi\|109094513 - gi\|109094513\|ref\|XP_001107418.1\| PREDICTED: similar to ribosomal protein L34 [Macaca mulatta]	169.0	[0..1]	[112..28]
gi\|89628429 - gi\|89628429\|gb\|ABD77505.1\| 60S ribosomal protein L34-like protein [Ovis aries]	165.0	[0..1]	[112..12]
rpl3402 - 60S ribosomal protein L34 RL34B_SCHPO - 60S ribosomal protein L34-B OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpl3402 PE=1 S...	164.0	[0..1]	[111..1]
gi\|60834772 - gi\|60834772\|gb\|AAX37110.1\| ribosomal protein L34 [synthetic construct]	162.0	[0..1]	[112..1]
gi\|47206357 - gi\|47206357\|emb\|CAG12549.1\| unnamed protein product [Tetraodon nigroviridis]	162.0	[0..1]	[112..1]
gi\|50369170, gi\|... - gi\|89268915\|emb\|CAJ83240.1\| ribosomal protein L34b [Xenopus tropicalis], gi\|52346120\|ref\|NP_00100510...	162.0	[0..1]	[112..1]

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Predicted Domain #1

Region A:
Residues: [1-112]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAQRVTYRRR LAYNTRSNRT RIIKTPGNNI RYLHIKKLGT IPRCGDTGVP LQGIPALRPR  60
   61 EFARLSHNKK TVQRAYGGCL SANAVKDRIV RAFLIEEQKI VKQKLKQLSS QK

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	0.963
Match:	2egqA
Description:	No description for 2egqA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits