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View Structure Prediction Details

Protein: rpl31
Organism: Schizosaccharomyces pombe
Length: 113 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for rpl31.

Description E-value Query
Range
Subject
Range
gi|73956853 - gi|73956853|ref|XP_546758.2| PREDICTED: similar to ribosomal protein L31 [Canis familiaris]
204.0 [0..3] [113..80]
gi|50730448 - gi|50730448|ref|XP_416909.1| PREDICTED: similar to ribosomal protein L31 [Gallus gallus]
202.0 [0..3] [113..58]
gi|148672373, gi... - gi|94399943|ref|XP_001002948.1| PREDICTED: similar to ribosomal protein L31 [Mus musculus], gi|94399...
192.0 [0..6] [113..45]
gi|109512301 - gi|109512301|ref|XP_001066801.1| PREDICTED: similar to ribosomal protein L31 [Rattus norvegicus]
186.0 [0..6] [113..43]
gi|109128997, gi... - gi|109128997|ref|XP_001097928.1| PREDICTED: similar to ribosomal protein L31 isoform 2 [Macaca mulat...
183.0 [0..6] [113..14]

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Predicted Domain #1
Region A:
Residues: [1-113]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MANTKKSAIN QVVTRDYTIH MHKRLYGVSF KKRAPRAIKE IVAFAQKHMQ TKEVRVDPSL  60
   61 NKEVWKRGIR NVPHRLRLRL SRKRSDEDDK ALYTYVQAVD VANPKMETTV VEE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 34.39794
Match: 1s1iW
Description: Structure of the ribosomal 80S-eEF2-sordarin complex from yeast obtained by docking atomic models for RNA and protein components into a 11.7 A cryo-EM map. This file, 1S1I, Contains 60S subunit. The 40S Ribosomal Subunit Is In File 1S1H.
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle