YRC Public Data Repository - Protein Structure Prediction

Protein:	rpl2403
Organism:	Schizosaccharomyces pombe
Length:	192 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for rpl2403.

Description	E-value	Query Range	Subject Range
gi\|76660704 - gi\|76660704\|ref\|XP_585396.2\| PREDICTED: similar to ribosomal protein L24-like [Bos taurus]	179.0	[0..1]	[112..122]
gi\|82995895, gi\|... - gi\|82996540\|ref\|XP_916736.1\| PREDICTED: similar to ribosomal protein L24-like [Mus musculus], gi\|829...	154.0	[0..1]	[163..23]
gi\|113428477 - gi\|113428477\|ref\|XP_001126611.1\| PREDICTED: similar to ribosomal protein L24-like [Homo sapiens]	149.0	[0..1]	[150..1]
gi\|114673299 - gi\|114673299\|ref\|XP_523936.2\| PREDICTED: similar to Chromosome 15 open reading frame 15 [Pan troglod...	145.0	[0..1]	[165..1]
RLP24_PONPY - Probable ribosome biogenesis protein RLP24 - Pongo pygmaeus (Orangutan) RLP24_PONAB - Probable ribosome biogenesis protein RLP24 OS=Pongo abelii GN=RSL24D1 PE=2 SV=1	143.0	[0..1]	[163..1]

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Predicted Domain #1

Region A:
Residues: [1-63]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRVHTCYFCS GPVYPGHGIM FVRNDSKVFR FCRSKCHKNF KMKRNPRKVA WTKAYRKAHG  60
   61 KEM

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	15.69897
Match:	1s1iS
Description:	Structure of the ribosomal 80S-eEF2-sordarin complex from yeast obtained by docking atomic models for RNA and protein components into a 11.7 A cryo-EM map. This file, 1S1I, Contains 60S subunit. The 40S Ribosomal Subunit Is In File 1S1H.
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [64-192]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VYDTALAVTA ARRNVPVRYD RNVIATTLNA MKRVSQVHAK RERLFYKKRL AGKRAQELQE  60
   61 AQKLIAQNVP QFTEPEGEVE TAEVQEPQIV SDEEYTMEEE VAEPVKIPVL AKKRKNKKSR 120
  121 NSSSAMQMD

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.21
Match:	1rh1A
Description:	crystal structure of the cytotoxic bacterial protein colicin B at 2.5 A resolution
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits