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View Structure Prediction Details

Protein: rpl1002
Organism: Schizosaccharomyces pombe
Length: 221 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for rpl1002.

Description E-value Query
Range		 Subject
Range
gi|109132846 - gi|109132846|ref|XP_001089131.1| PREDICTED: similar to ribosomal protein L10 [Macaca mulatta]
 316.0 [0..1] [212..58]
gi|60834521 - gi|60834521|gb|AAX37098.1| ribosomal protein L10 [synthetic construct]
 315.0 [0..1] [215..1]
gi|167045820 - gi|167045820|gb|ABZ10488.1| ribosomal protein L10 (predicted) [Callithrix jacchus]
gi|226955351 - gi|226955351|gb|ACO95346.1| ribosomal protein L10 (predicted) [Dasypus novemcinctus]
RL10_PAPAN - 60S ribosomal protein L10 OS=Papio anubis GN=RPL10 PE=3 SV=1
gi|170649634 - gi|170649634|gb|ACB21221.1| ribosomal protein L10 (predicted) [Callicebus moloch]
RPL10 - ribosomal protein L10
gi|51980562 - gb|AAH82196.1| Unknown (protein for MGC:98731) [Xenopus laevis]
RL10_MOUSE - 60S ribosomal protein L10 OS=Mus musculus GN=Rpl10 PE=1 SV=3
RL10_RAT - 60S ribosomal protein L10 OS=Rattus norvegicus GN=Rpl10 PE=1 SV=3
gi|190576574 - gi|190576574|gb|ACE79064.1| 60S ribosomal protein L10 (predicted) [Sorex araneus]
tr|F7AYR2|F7AYR2... - Uncharacterized protein OS=Equus caballus OX=9796 GN=RPL10 PE=4 SV=1
gi|74008842, gi|... - gi|74008842|ref|XP_867641.1| PREDICTED: similar to ribosomal protein L10 isoform 7 [Canis familiaris...
ENSMMUT000000077... - null, null
 315.0 [0..1] [212..1]
gi|74212071 - gi|74212071|dbj|BAE40200.1| unnamed protein product [Mus musculus]
 314.0 [0..1] [212..1]
RPL10 - ribosomal protein L10
gi|60654969, gi|... - gi|60654969|gb|AAX32048.1| ribosomal protein L10 [synthetic construct], gi|117645498|emb|CAL38215.1|...
 313.0 [0..1] [212..1]
RL10_PONPY - 60S ribosomal protein L10 - Pongo pygmaeus (Orangutan)
RL10_PONAB - 60S ribosomal protein L10 OS=Pongo abelii GN=RPL10 PE=2 SV=3
 312.0 [0..1] [212..1]
RL10_SHEEP - 60S ribosomal protein L10 OS=Ovis aries GN=RPL10 PE=2 SV=1
RL10_BOVIN - 60S ribosomal protein L10 OS=Bos taurus GN=RPL10 PE=2 SV=4
RL10_PIG - 60S ribosomal protein L10 OS=Sus scrofa GN=RPL10 PE=1 SV=3
gi|51814392 - gi|51814392|gb|AAU09485.1| GekBS044P [Gekko japonicus]
 312.0 [0..1] [212..1]

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Predicted Domain #1
Region A:
Residues: [1-221] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARRPARCYR YCKNKPYPKS RYNRAVPDSK IRIFDLGRKR AGVDEFPLCI HLVSNEYEQI  60
   61 TSEALEAARI CANKYLVKIG GKDSFHLRVR AHPFHVVRIN KMLSCAGADR LQTGMRHAFG 120
  121 KPNGLVARVN IGQVLMSVRT KDSSRATAIE ALRRCQYKFP GQQRIIVSKK WGFSQYARDE 180
  181 YIEKRSRGEI IPDGCYAKFL NKRGSLQEKL DLFPEASFNL A

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 55.522879
Match: 1s1iI
Description: Structure of the ribosomal 80S-eEF2-sordarin complex from yeast obtained by docking atomic models for RNA and protein components into a 11.7 A cryo-EM map. This file, 1S1I, Contains 60S subunit. The 40S Ribosomal Subunit Is In File 1S1H.
Matching Structure (courtesy of the PDB):
YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle