YRC Public Data Repository - Protein Structure Prediction

Protein:	rpl1101, rpl1102
Organism:	Schizosaccharomyces pombe
Length:	174 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for rpl1101, rpl1102.

Description	E-value	Query Range	Subject Range
gi\|112984334, gi... - gi\|54609213\|gb\|AAV34822.1\| ribosomal protein L11 [Bombyx mori], gi\|112984334\|ref\|NP_001037215.1\| rib...	247.0	[0..3]	[173..21]
gi\|60654283 - gi\|60654283\|gb\|AAX29834.1\| ribosomal protein L11 [synthetic construct]	244.0	[0..6]	[172..8]
gi\|187609302 - gi\|187609302\|pdb\|2ZKR\|DD Chain d, Structure Of A Mammalian Ribosomal 60s Subunit Within An 80s Compl... tr\|G1TUB8\|G1TUB8... - Uncharacterized protein OS=Oryctolagus cuniculus GN=RPL11 PE=1 SV=2 gi\|208967312 - gi\|208967312\|dbj\|BAG73670.1\| ribosomal protein L11 [synthetic construct] RL11_CHILA - 60S ribosomal protein L11 OS=Chinchilla lanigera GN=RPL11 PE=2 SV=3 RL11_BOVIN - 60S ribosomal protein L11 OS=Bos taurus GN=RPL11 PE=2 SV=3 gi\|149695161 - gi\|149695161\|ref\|XP_001504267.1\| PREDICTED: similar to 60S ribosomal protein L11 [Equus caballus] RL11_RAT - 60S ribosomal protein L11 OS=Rattus norvegicus GN=Rpl11 PE=1 SV=2 gi\|57678 - gi\|57678\|emb\|CAA44072.1\| ribosomal protein L11 [Rattus rattus] gi\|51980366 - gb\|AAH82185.1\| Unknown (protein for MGC:98663) [Xenopus laevis] RPL11 - ribosomal protein L11 RL11_MOUSE - 60S ribosomal protein L11 OS=Mus musculus GN=Rpl11 PE=1 SV=4	244.0	[0..6]	[172..9]
gi\|14719845, gi\|... - gi\|17512001\|gb\|AAH18970.1\| Ribosomal protein L11 [Homo sapiens], gi\|14719845\|gb\|AAD20460.3\| ribosoma... gi\|157929150, gi... - gi\|157929150\|gb\|ABW03860.1\| ribosomal protein L11 [synthetic construct], gi\|124000405\|gb\|ABM87711.1\|...	244.0	[0..6]	[172..8]
RL11_PIG - 60S ribosomal protein L11 OS=Sus scrofa GN=RPL11 PE=1 SV=3	243.0	[0..6]	[172..9]
RL11_PONAB - 60S ribosomal protein L11 OS=Pongo abelii GN=RPL11 PE=2 SV=3 RL11_PONPY - 60S ribosomal protein L11 - Pongo pygmaeus (Orangutan)	243.0	[0..6]	[172..9]
gi\|56417562 - gi\|56417562\|gb\|AAV90722.1\| 60S ribosomal protein L11 [Aedes albopictus]	242.0	[0..2]	[173..8]

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Predicted Domain #1

Region A:
Residues: [1-174]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEKAQNPMK ELRISKLVLN ISLGESGDRL TRAAKVLEQL SGQTPVFSKA RYTIRRFGIR  60
   61 RNEKIACHVT VRGPKAEEIL ERGLKVKEYE LKKRNFSATG NFGFGIQEHI DLGIKYDPSI 120
  121 GIYGMDFYVV MDRPGMRVAR RKAQRGRVGY THKINAEDTI NWFKQKYDAV VLGK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	60.522879
Match:	1s1iJ
Description:	Structure of the ribosomal 80S-eEF2-sordarin complex from yeast obtained by docking atomic models for RNA and protein components into a 11.7 A cryo-EM map. This file, 1S1I, Contains 60S subunit. The 40S Ribosomal Subunit Is In File 1S1H.
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits