YRC Public Data Repository - Protein Structure Prediction

Protein:	cdc22
Organism:	Schizosaccharomyces pombe
Length:	811 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for cdc22.

Description	E-value	Query Range	Subject Range
gi\|486685, gi\|297447 - pir\|\|S34807 ribonucleoside-diphosphate reductase (EC 1.17.4.1) large chain - fission yeast (Schizosa...	1052.0	[0..1]	[811..1]
gi\|81673077 - gi\|81673077\|gb\|AAI09487.1\| LOC505537 protein [Bos taurus]	1025.0	[0..1]	[811..64]
gi\|38109476, gi\|... - gi\|39978231\|ref\|XP_370503.1\| hypothetical protein MGG_07000 [Magnaporthe grisea 70-15], gb\|EAA55343....	1023.0	[0..1]	[794..1]
gi\|53127690, gi\|... - gi\|71895081\|ref\|NP_001026008.1\| ribonucleoside-diphosphate reductase M1 chain [Gallus gallus], gi\|53...	1022.0	[0..1]	[811..1]
gi\|55250768, gi\|... - gi\|61557388\|ref\|NP_001013254.1\| ribonucleotide reductase M1 [Rattus norvegicus], gi\|55250768\|gb\|AAH8...	1021.0	[0..1]	[811..1]
gi\|55250799 - gb\|AAH86021.1\| Unknown (protein for MGC:98095) [Xenopus laevis] RIR1_MOUSE - Ribonucleoside-diphosphate reductase large subunit OS=Mus musculus GN=Rrm1 PE=1 SV=2	1020.0	[0..1]	[811..1]
RIR1_ARATH - Ribonucleoside-diphosphate reductase large subunit OS=Arabidopsis thaliana GN=RNR1 PE=1 SV=1	1020.0	[0..1]	[811..1]
gi\|73988079 - gi\|73988079\|ref\|XP_534027.2\| PREDICTED: similar to Ribonucleoside-diphosphate reductase large subuni...	1020.0	[0..1]	[811..1]

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Predicted Domain #1

Region A:
Residues: [1-811]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFVYKRDGRQ EKVAFDKITA RVSRLCYGLD SDHVDPVEIT QKVISGVYPG VTTIELDNLA  60
   61 AETAATMTTK HPDYAILAAR IAVSNLHKQT EKVFSTVVQQ LHDYVNPKTD KPAPMISDKI 120
  121 YDIVMKHKDE LDSAIIYDRD FTYNFFGFKT LERSYLLRID GKVAERPQHM IMRVAVGIHG 180
  181 EDIEAAIETY NLMSQRYFTH ASPTLFNAGT PRPQLSSCFL VTMKDDSIEG IYDTLKMCAM 240
  241 ISKTAGGIGI NIHNIRATGS YIAGTNGTSN GIVPMIRVYN NTARYVDQGG NKRPGAFAAY 300
  301 LEPWHADVMD FLELRKTHGN EDFRAREMFY ALWIPDLFMQ RVERNEQWTF FCPNEAPGLA 360
  361 DVWGDEFVAL YEKYEKENRG RRSLPAQKVW YAILQSQVET GNPFMLYKDS CNRKSNQKNV 420
  421 GTIRCSNLCT EIVEYSSPDE VAVCNLASVA LPTFIKDGKY NFQKLHDVVK VVTRNLNKII 480
  481 DVNYYPVPEA RRSNMRHRPV GLGVQGLADA FFALRLPFES AGAKKLNIQI FETIYHAALE 540
  541 ASCEIAQVEG TYESYEGSPA SQGILQYDMW NVNPTDLWDW AELKEKIAKH GIRNSLLVAP 600
  601 MPTASTSQIL GFNECFEPYT SNMYQRRVLS GEFQIVNPWL LKDLVERDLW NEDMKNKLVM 660
  661 LDGSIQAIPE IPQDLKDLYK TVWEISQKTV IDYAADRGPF IDQSQSLNIH LKDPSYGKIT 720
  721 SMHFYGWKKG LKTGMYYLRT MAASAAIKFT VDPVALRARN EESNEENKKP VIKNGKAEIS 780
  781 AEPTKEEIDI YNEKVLACSI KNPEACEMCS A

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	1000.0
Match:	1zyzA
Description:	Structures of Yeast Ribonucloetide Reductase I
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits