YRC Public Data Repository - Protein Structure Prediction

Protein:	rhp41
Organism:	Schizosaccharomyces pombe
Length:	638 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for rhp41.

Description	E-value	Query Range	Subject Range
gi\|67526865, gi\|... - gi\|67526865\|ref\|XP_661494.1\| hypothetical protein AN3890.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	618.0	[0..3]	[634..97]
gi\|42549317, gi\|... - gi\|46127989\|ref\|XP_388548.1\| hypothetical protein FG08372.1 [Gibberella zeae PH-1], gi\|42549317\|gb\|E...	615.0	[0..15]	[635..127]
gi\|39952113, gi\|... - gi\|39952113\|ref\|XP_363773.1\| hypothetical protein MGG_01699 [Magnaporthe grisea 70-15], gb\|EAA56048....	599.0	[0..25]	[638..116]
orf19.6722, orf1... - orf19.6722 CGDID:CAL0004788 Assembly 19, Contig19-10254 (22001, 19872) CDS, reverse complemented, tr... gi\|46441659, gi\|... - gi\|68472286\|ref\|XP_719704.1\| hypothetical protein CaO19.14014 [Candida albicans SC5314], gi\|68472051...	557.0	[0..7]	[638..40]
gi\|169606298, gi... - gi\|169606298\|ref\|XP_001796569.1\| hypothetical protein SNOG_06187 [Phaeosphaeria nodorum SN15], gi\|11...	540.0	[0..36]	[635..155]
gi\|70989535, gi\|... - gi\|70989535\|ref\|XP_749617.1\| DNA repair protein Rad4 [Aspergillus fumigatus Af293], gi\|66847248\|gb\|E...	539.0	[0..4]	[635..55]
gi\|85105352 - gi\|85105352\|ref\|XP_961945.1\| hypothetical protein NCU06585 [Neurospora crassa OR74A] gi\|32411919, gi\|... - gi\|32411919\|ref\|XP_326440.1\| hypothetical protein [Neurospora crassa], gi\|28923532\|gb\|EAA32709.1\| co...	535.0	[0..125]	[638..276]

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Predicted Domain #1

Region A:
Residues: [1-638]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMSDEDNTYS DDEEWLDLDL GLPNNDIKTA PILNSSLLSS AVHGERLIQE RPTHDFGDVE  60
   61 ATVDRTVEKR SRLKITSVDR KIRLQIHQLH LLCLTYHLCT RNTWCDDNRL NYLVKYIPPG 120
  121 IRVSLHPSSQ KSQMIRNKTF LHGLAGLVEV WKRKYKITTN GLRKPNYGLL QNNSLISESL 180
  181 SLEEFCKNSK LLSGSRDYGT QLFASILRNL NVPTRLVFSL QVLSFRFKGA INEASSHEIV 240
  241 PAWSQQMEND SSSDISESAH ITSRFRKRRK IIQPSFSNLS HLDASDIVTE DTKLKVIDSP 300
  301 KPVFWVEAFN KAMQKWVCVD PFGDASVIGK YRRFEPASSD HLNQMTYVFA IEANGYVKDV 360
  361 TRKYCLHYYK ILKNRVEIFP FGKAWMNRIF SKIGKPRDFY NDMDAIEDAE LLRLEQSEGI 420
  421 PRNIQDLKDH PLFVLERHLK KNQAIKTGKS CGRINTKNGV ELVYPRKYVS NGFSAEHWYR 480
  481 KGRIIKPGAQ PLKHVKNGDK VLPLYDEEAT QLYTPKPVVA NIVPKNAYGN IDLYVPSMLP 540
  541 YGAYHCRKRC ALAAAKFLEI DYAKAVVGFD FQRKYSKPKL EGVVVSKRYE EAIDLIAEEI 600
  601 DQEEKEAEAR NVRKTCLLLW KRLITGLRIR QRVFEEYG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	132.0
Match:	2qshA
Description:	No description for 2qshA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits