YRC Public Data Repository - Protein Structure Prediction

Protein:	rep1
Organism:	Schizosaccharomyces pombe
Length:	472 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

No multiple sequence alignment data found for rep1.

Predicted Domain #1

Region A:
Residues: [1-236]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSDRCLTDE ISLNTLSSTF ASDNNLRRKE NFLKSRYPSK FDLNVSMLTK SDDVGKTPFS  60
   61 IFDSPSNPGF SRSHQMCSDK NKSPFLFDKI RDEPVSVDPV KLIINNRNKR KINRQKSRLQ 120
  121 GLYRSDANGL QPLNSENVKM KKSTALSLTS SPLNSWKTDF KTPPKANVVC ISLVIEGDGC 180
  181 ASLLYEDLNQ ISNSCPEVAP NRQNALFSDE TLTTMFYSGV TEDEGSCNNL LQSSFG

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [237-472]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DDLDLGMQRS ATWAPGYNYP SKFDSIPFAS ASPKIKAAFP FDPNVYALNT NDGPVTSTDN  60
   61 NCDQLNTRMQ AWNNGFNYSN LNGDIQYPAV TPKFFQQEGR ALNVSDCNFG NEEIAYGGIP 120
  121 MRVCHSDSTL CDARIAAKQA LKGKRQYDTS TSKAELSTPP SKRRHIDDAD LVFHSSPLLS 180
  181 RSRFICCYCT KPFLSISKLQ EHESSCSHVE RLFGFAPNRL YDDGDGFLGS SFCSDW