YRC Public Data Repository - Protein Structure Prediction

Protein:	rec12
Organism:	Schizosaccharomyces pombe
Length:	345 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for rec12.

Description	E-value	Query Range	Subject Range
gi\|114682753 - gi\|114682753\|ref\|XP_514741.2\| PREDICTED: meiotic recombination protein SPO11 isoform 2 [Pan troglody...	374.0	[0..10]	[334..47]
gi\|162318682 - gi\|162318682\|gb\|AAI56814.1\| Sporulation protein, meiosis-specific, SPO11 homolog (S. cerevisiae) [sy... SPO11_MOUSE - Meiotic recombination protein SPO11 OS=Mus musculus GN=Spo11 PE=1 SV=2	373.0	[0..14]	[333..51]
SPO11 - SPO11 meiotic protein covalently bound to DSB homolog (S. cerevisiae)	372.0	[0..10]	[334..47]
gi\|109091516 - gi\|109091516\|ref\|XP_001088572.1\| PREDICTED: similar to meiotic recombination protein SPO11 isoform a...	368.0	[0..14]	[334..51]
gi\|109471419, gi... - gi\|109471419\|ref\|XP_001053782.1\| PREDICTED: similar to Meiotic recombination protein SPO11 [Rattus n...	367.0	[0..10]	[333..47]
gi\|76612963 - gi\|76612963\|ref\|XP_872833.1\| PREDICTED: similar to meiotic recombination protein SPO11 isoform 2 [Bo...	363.0	[0..10]	[334..47]
gi\|73992352 - gi\|73992352\|ref\|XP_853487.1\| PREDICTED: similar to meiotic recombination protein SPO11 isoform a iso...	362.0	[0..10]	[334..47]
SPO11_ARATH - Meiotic recombination protein SPO11-1 OS=Arabidopsis thaliana GN=SPO11-1 PE=1 SV=1	361.0	[0..10]	[335..13]

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Predicted Domain #1

Region A:
Residues: [1-345]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNSNDKKKVV RSWIEQFVHD FVEQLSKPTK DSVNVALKRR KHNSWNGSLD SKANERQKVK  60
   61 VFSFPRNETT IAQLFRVLDC VHEAVISDTV ITKRDIYYRD VDLFKRQTVV DELLGDISNT 120
  121 IGCSRSDLNV EASAKGLVFG SIHIALENGT VITATKPLLI SHHRISSITS TAKWVLVIEK 180
  181 EAVFQTLTEE ALADTIIVTA KGFPDLMTRK FLVKLAKALP DAKFFGIFDW DPHGLCIYSC 240
  241 FKYGSNAYSH EPHSQLRNLQ LLGPLYEDIF NKNQEFSLKL NKRDIKMITT LLQFEGFQKE 300
  301 PVVREQLQRM LFIQKKAEIQ AILEFPSWIK GKLADADKSG KHSVR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	85.69897
Match:	2q2eA
Description:	No description for 2q2eA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits