YRC Public Data Repository - Protein Structure Prediction

Protein:	rcd1
Organism:	Schizosaccharomyces pombe
Length:	283 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for rcd1.

Description	E-value	Query Range	Subject Range
gi\|74005731 - gi\|74005731\|ref\|XP_853052.1\| PREDICTED: similar to rcd1 (required for cell differentiation) homolog ...	510.0	[0..10]	[282..156]
RCD1_MACFA - Cell differentiation protein RCD1 homolog OS=Macaca fascicularis GN=RQCD1 PE=2 SV=1 gi\|194211312 - gi\|194211312\|ref\|XP_001491581.2\| PREDICTED: similar to RCD1 required for cell differentiation1 homol... RCD1_RAT - Cell differentiation protein RCD1 homolog OS=Rattus norvegicus GN=Rqcd1 PE=1 SV=1 RCD1_MOUSE - Cell differentiation protein RCD1 homolog OS=Mus musculus GN=Rqcd1 PE=1 SV=1 gi\|126337826 - gi\|126337826\|ref\|XP_001363406.1\| PREDICTED: hypothetical protein [Monodelphis domestica] ENSOCUP000000168... - pep:novel chromosome:oryCun2:7:159854153:159878047:1 gene:ENSOCUG00000001981 transcript:ENSOCUT00000... ENSCJAT00000021641 - null tr\|G3HWH2\|G3HWH2... - Cell differentiation protein RCD1-like OS=Cricetulus griseus GN=I79_015330 PE=4 SV=1 RCD1_BOVIN - Cell differentiation protein RCD1 homolog OS=Bos taurus GN=RQCD1 PE=2 SV=1	486.0	[0..10]	[282..18]
gi\|114583332 - gi\|114583332\|ref\|XP_001157955.1\| PREDICTED: RCD1 required for cell differentiation1 homolog [Pan tro... RCD1_PONAB - Cell differentiation protein RCD1 homolog OS=Pongo abelii GN=RQCD1 PE=2 SV=2 RQCD1 - RCD1 required for cell differentiation1 homolog (S. pombe)	485.0	[0..10]	[282..18]
RCD1_XENLA - Cell differentiation protein RCD1 homolog OS=Xenopus laevis GN=rqcd1 PE=2 SV=1 RCD1_XENTR - Cell differentiation protein RCD1 homolog OS=Xenopus tropicalis GN=rqcd1 PE=2 SV=1	485.0	[0..10]	[282..18]
gi\|197097646 - gi\|197097646\|ref\|NP_001126453.1\| RCD1 required for cell differentiation1 homolog [Pongo abelii] gi\|55731505 - gi\|55731505\|emb\|CAH92464.1\| hypothetical protein [Pongo abelii]	484.0	[0..10]	[282..18]
gi\|47226808 - gi\|47226808\|emb\|CAG06650.1\| unnamed protein product [Tetraodon nigroviridis]	481.0	[0..10]	[282..16]
RCD1_DANRE - Cell differentiation protein RCD1 homolog OS=Danio rerio GN=rqcd1 PE=2 SV=1	474.0	[0..10]	[282..17]
gi\|116117043, gi... - gi\|118792741\|ref\|XP_320477.3\| ENSANGP00000015668 [Anopheles gambiae str. PEST], gi\|116117043\|gb\|EAA0...	472.0	[0..3]	[282..5]

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Predicted Domain #1

Region A:
Residues: [1-283]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MENLESPNYE PALVYEWIIQ LVSGTSREQA LVELSRKREQ YEDLALILWH SYGVMTALLQ  60
   61 EIISVYPLLN PPTLTGPTSN RVCNALALLQ CIASHPETRI HFLNAHITLF LYPFLNTLSK 120
  121 SKPFEYLRLT SLGVIGALVK NDSPEVINFL LSTEIIPLCL RIMENGSELS KTVAIFIVQK 180
  181 FLCDDVGLQY ICQTYERFYA VASVLNNMVM QLVDSFAFRL LKHVIRCYLR LSDNPRAREA 240
  241 LRHCLPEPLR DATFAQVLKD DHNTKKCLAQ LLINLSDVAV VNQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	135.0
Match:	2fv2A
Description:	No description for 2fv2A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits