YRC Public Data Repository - Protein Structure Prediction

Protein:	ran1
Organism:	Schizosaccharomyces pombe
Length:	470 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ran1.

Description	E-value	Query Range	Subject Range
gi\|82809, gi\|5034 - pir\|\|A25685 hypothetical protein ran 1+ - fission yeast (Schizosaccharomyces pombe), gi\|5034\|emb\|CA...	279.0	[0..1]	[470..1]
gi\|108796663 - gi\|108796663\|ref\|NP_001035813.1\| calcium/calmodulin-dependent protein kinase II beta isoform 1 [Ratt... gi\|56207096, gi\|... - gi\|56207096\|emb\|CAI25256.1\| calcium/calmodulin-dependent protein kinase II, beta [Mus musculus], gi\|...	265.0	[0..14]	[468..10]
gi\|73952971 - gi\|73952971\|ref\|XP_546168.2\| PREDICTED: similar to calcium/calmodulin-dependent protein kinase II ga...	263.0	[0..14]	[459..10]
gi\|148708624, gi... - gi\|56207101\|emb\|CAI25261.1\| calcium/calmodulin-dependent protein kinase II, beta [Mus musculus], gi\|...	263.0	[0..14]	[468..10]
gi\|109075452 - gi\|109075452\|ref\|XP_001096343.1\| PREDICTED: similar to calcium/calmodulin-dependent protein kinase I...	260.0	[0..7]	[381..3]
gi\|71834408, gi\|... - gi\|71834408\|ref\|NP_001025296.1\| calcium/calmodulin-dependent protein kinase (CaM kinase) II gamma 1 ...	259.0	[0..8]	[460..4]
gi\|114595762 - gi\|114595762\|ref\|XP_001146252.1\| PREDICTED: hypothetical protein isoform 3 [Pan troglodytes]	259.0	[0..7]	[380..3]

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Predicted Domain #1

Region A:
Residues: [1-360]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMRENPELLL GQVLGDSLRF VSIIGAGAYG VVYKAEDIYD GTLYAVKALC KDGLNEKQKK  60
   61 LQARELALHA RVSSHPYIIT LHRVLETEDA IYVVLQYCPN GDLFTYITEK KVYQGNSHLI 120
  121 KTVFLQLISA VEHCHSVGIY HRDLKPENIM VGNDVNTVYL ADFGLATTEP YSSDFGCGSL 180
  181 FYMSPECQRE VKKLSSLSDM LPVTPEPIES QSSSFATAPN DVWALGIILI NLCCKRNPWK 240
  241 RACSQTDGTY RSYVHNPSTL LSILPISREL NSLLNRIFDR NPKTRITLPE LSTLVSNCKN 300
  301 LTRRLRPAPL VSSRYLAYQQ QQQQQQMNLQ QGIQGYPHQG YMPTQNIGFP WPPTPQFVSN 360
  361

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	62.69897
Match:	2qnjA
Description:	No description for 2qnjA was found.

Predicted Domain #2

Region A:
Residues: [361-470]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 WNHCATPTIP VSLQVLTPNS SLKVDPTTPL TAPIHATESF WPSAAAAAAA VHNNANSYMP  60
   61 ITPTPYPNNA KIFGYPNQPP LTPIPFTGFV LHPAPVGRAA DAVDPSRKSL

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits