YRC Public Data Repository - Protein Structure Prediction

Protein:	rad9
Organism:	Schizosaccharomyces pombe
Length:	426 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for rad9.

Description	E-value	Query Range	Subject Range
gi\|101066, gi\|5032 - gi\|5032\|emb\|CAA46693.1\| rad9 [Schizosaccharomyces pombe], gi\|101066\|pir\|\|S26143 rad9 protein (allele...	572.0	[0..1]	[426..1]
RAD9_SCHOT - DNA repair protein rad9 OS=Schizosaccharomyces octosporus GN=rad9 PE=2 SV=1	510.0	[0..1]	[426..1]
RAD9A_MOUSE - Cell cycle checkpoint control protein RAD9A OS=Mus musculus GN=Rad9a PE=1 SV=1	448.0	[0..1]	[402..1]
gi\|147905155, gi... - gi\|54311508\|gb\|AAH84872.1\| Rad9 protein [Xenopus laevis], gi\|30060005\|gb\|AAP13339.1\| PCNA-like DNA c...	430.0	[0..2]	[402..6]
gi\|109105212 - gi\|109105212\|ref\|XP_001106622.1\| PREDICTED: similar to RAD9 homolog isoform 2 [Macaca mulatta]	429.0	[0..1]	[402..1]
RAD9A - RAD9 homolog A (S. pombe)	428.0	[0..1]	[402..1]
gi\|46401624, gi\|... - gi\|47087167\|ref\|NP_998748.1\| RAD9 homolog A [Gallus gallus], gi\|46401624\|dbj\|BAD16573.2\| Rad9 [Gallu...	423.0	[0..1]	[402..1]
gi\|73983605 - gi\|73983605\|ref\|XP_540817.2\| PREDICTED: similar to RAD9 homolog [Canis familiaris]	411.0	[0..1]	[402..114]

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Predicted Domain #1

Region A:
Residues: [1-321]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEFTVSNVNL RDLARIFTNL SRIDDAVNWE INKNQIEITC LNSSRSGFSM VTLKKAFFDK  60
   61 YIFQPDSVLL TGLMTPTIRI RTQVKPILSV FRNKIFDFIP TVVTTNSKNG YGSESASRKD 120
  121 VIVENVQISI STGSECRIIF KFLCKHGVIK TYKISYEQTQ TLHAVFDKSL SHNNFQINSK 180
  181 ILKDLTEHFG QRTEELTIQP LQERVLLTSF TEEVVHNRDI LKQPTQTTVS IDGKEFERVA 240
  241 LNEGVSVTLS LREFRAAVIL AEALGSSICA YYGVPGKPIL LTFAKGKNSE IEAQFILATV 300
  301 VGSDEQEVSS MMGNRWQHSS T

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	5.9
Match:	2hiiA
Description:	No description for 2hiiA was found.

Predicted Domain #2

Region A:
Residues: [322-426]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PASLFNSVER NNSLTAVAHN PPGSIGWQTD QSDSSRMFNS ALDRSDETNG IKEPSTTNDA  60
   61 GQSLFLDGIP NESELAAFNN DVNDDAEFGP TQAEQSYHGI FSQED

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits