YRC Public Data Repository - Protein Structure Prediction

Protein:	rhp57
Organism:	Schizosaccharomyces pombe
Length:	354 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for rhp57.

Description	E-value	Query Range	Subject Range
gi\|114197176, gi... - gi\|115491377\|ref\|XP_001210316.1\| DNA repair protein RAD51 [Aspergillus terreus NIH2624], gi\|11419717...	236.0	[0..9]	[353..31]
gi\|111380646 - gi\|111380646\|gb\|ABH09700.1\| RAD51-like protein [Penicillium marneffei] gi\|210066471, gi... - gi\|212542819\|ref\|XP_002151564.1\| DNA repair protein RAD51, putative [Penicillium marneffei ATCC 1822...	235.0	[0..15]	[353..39]
gi\|83774056 - gi\|83774056\|dbj\|BAE64181.1\| unnamed protein product [Aspergillus oryzae] gi\|220693763, gi... - gi\|238498508\|ref\|XP_002380489.1\| DNA repair protein RAD51, putative [Aspergillus flavus NRRL3357], g... gi\|169781702 - gi\|169781702\|ref\|XP_001825314.1\| hypothetical protein [Aspergillus oryzae RIB40]	234.0	[0..15]	[353..38]
gi\|159131162 - gi\|159131162\|gb\|EDP56275.1\| DNA repair protein RAD51, putative [Aspergillus fumigatus A1163] gi\|70995295, gi\|... - gi\|70995295\|ref\|XP_752407.1\| DNA repair protein RAD51 [Aspergillus fumigatus Af293], gi\|66850042\|gb\|...	234.0	[0..15]	[353..38]
gi\|63852088 - gi\|63852088\|dbj\|BAD98461.1\| RecA homolog Rad51 [Oreochromis niloticus]	234.0	[0..6]	[353..24]
gi\|9904315 - gi\|9904315\|gb\|AAB39323.2\| ARECA [Aspergillus nidulans] gi\|49086692, gi\|... - gi\|67521554\|ref\|XP_658841.1\| hypothetical protein AN1237.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	233.0	[0..15]	[353..34]
gi\|1816461 - gi\|1816461\|emb\|CAB02454.1\| uvsC [Emericella nidulans]	233.0	[0..15]	[353..38]
gi\|169843884, gi... - gi\|169843884\|ref\|XP_001828666.1\| hypothetical protein CC1G_10538 [Coprinopsis cinerea okayama7#130],... gi\|3237296 - gi\|3237296\|gb\|AAC23703.1\| Rah1 [Coprinus cinereus]	233.0	[0..3]	[353..25]
gi\|68485285, gi\|... - gi\|68485358\|ref\|XP_713440.1\| hypothetical protein CaO19.3752 [Candida albicans SC5314], gi\|68485285\|... gi\|238879694 - gi\|238879694\|gb\|EEQ43332.1\| DNA repair protein RAD51 [Candida albicans WO-1] orf19.11236, orf... - RAD51 CGDID:CAL0001214 Assembly 19, Contig19-10190 (65480, 66565) CDS, translated using codon table ...	233.0	[0..5]	[353..43]
gi\|2058709, gi\|1... - gi\|2058709\|gb\|AAB53330.1\| Rad51 homolog [Bombyx mori], gi\|112984536\|ref\|NP_001037484.1\| Rad51 homolo...	232.0	[0..15]	[353..36]

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Predicted Domain #1

Region A:
Residues: [1-354]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDISNYVDNF YFDEKIASAF ELGEVSTVDL LTLDITELER RTHCSQSELL QLIEQISLLL  60
   61 QPVRCSASKV TSKYLTTGDV KLDETLHGGI PVGQLTEICG ESGSGKSQFC MQLCLMVQLP 120
  121 LSLGGMNKAA VFISTESGLE TKRLFELARY LPERYPKADK KDIIIKNPGD RVYTILCPDL 180
  181 ESQEHIIQYQ LPILFNRDKI GLVILDSVAS NYRAELRYNR SKSHFRDLDN IAKRGNQLGK 240
  241 LAMTLRTLAH QHEAAVVIAN QVSDRIPRDY DAIGLFSLDY QSQWFSGWDD TDPNPKIPSL 300
  301 GLVWTNNIST RLALIKKTDS ATNNSGRIFR VVYSPNSPRL DVRICIGSVG IYSC

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	55.09691
Match:	2bkeA
Description:	Conformational Flexibility Revealed by the Crystal Structure of a Crenarchaeal RadA
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits