YRC Public Data Repository - Protein Structure Prediction

Protein:	rhp54
Organism:	Schizosaccharomyces pombe
Length:	852 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for rhp54.

Description	E-value	Query Range	Subject Range
gi\|542215, gi\|452690 - pir\|\|S41886 DNA repair protein - fission yeast (Schizosaccharomyces pombe), gi\|452690\|emb\|CAA82750.1...	547.0	[0..1]	[852..1]
gi\|188219327, gi... - gi\|27803083\|emb\|CAD60786.1\| unnamed protein product [Podospora anserina], gi\|188219327\|emb\|CAP49307.... gi\|189091948 - gi\|189091948\|ref\|XP_001929807.1\| [Podospora anserina]	467.0	[0..10]	[852..3]
gi\|115389990, gi... - gi\|115389990\|ref\|XP_001212500.1\| DNA repair and recombination protein RAD54 [Aspergillus terreus NIH...	465.0	[0..20]	[852..30]
gi\|22775414 - gi\|22775414\|dbj\|BAC11858.1\| recombinational repair protein [Magnaporthe grisea]	464.0	[0..12]	[852..7]
gi\|39942938, gi\|... - gi\|39942938\|ref\|XP_361006.1\| hypothetical protein MG03549.4 [Magnaporthe grisea 70-15], gb\|EAA51954....	460.0	[0..12]	[852..47]
gi\|66848801, gi\|... - gi\|70992639\|ref\|XP_751168.1\| dsDNA-dependent ATPase (Rad54), putative [Aspergillus fumigatus Af293],...	459.0	[0..26]	[852..120]
gi\|46127169, gi\|... - gi\|46127169\|ref\|XP_388138.1\| hypothetical protein FG07962.1 [Gibberella zeae PH-1], gi\|42553736\|gb\|E...	458.0	[0..25]	[852..75]
gi\|32421361, gi\|... - gi\|40804592\|emb\|CAF05853.1\| Rad54 homolog MUS-25 [Neurospora crassa], gi\|32421361\|ref\|XP_331124.1\| h... gi\|85092588 - gi\|85092588\|ref\|XP_959470.1\| DNA repair and recombination protein RAD54 [Neurospora crassa OR74A]	456.0	[0..1]	[852..1]
gi\|83767454 - gi\|83767454\|dbj\|BAE57593.1\| unnamed protein product [Aspergillus oryzae] gi\|169770251 - gi\|169770251\|ref\|XP_001819595.1\| hypothetical protein [Aspergillus oryzae RIB40]	456.0	[0..5]	[852..8]
gi\|111068916 - gi\|111068916\|gb\|EAT90036.1\| hypothetical protein SNOG_03305 [Phaeosphaeria nodorum SN15]	451.0	[0..26]	[852..25]

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Predicted Domain #1

Region A:
Residues: [1-201]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIQQPTTAKP RISTSSKLNT VLSKNKENVP GKLFKKFKCP SLVISEKRKE LPLRKKPRVN  60
   61 YSEYGSVDGK YDSAYVSENV SGLATIKEAN RLILNHERRD PSTVIKKQFS VPKPIKGHED 120
  121 ISKLCAHRPP PTLGMKRKVD FIPRPLYDPA DEFAIVLYDP TTDADEIIPD IKEVLAEKRK 180
  181 KDELLKNRKG KKEISDSEPE S

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	14.21467
Match:	PF08658.1
Description:	No description for PF08658.1 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [202-852]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DHDSCVSTDT VASCSTEQSL ITSNTSKHRR PNKSLKDLLG IQKEKPPPPP VAVVIDPKLA  60
   61 RILRPHQIEG VKFLYKCVTG RIDRCANGCI MADEMGLGKT LQCIALLWTL LKQSPQAGKP 120
  121 TIEKAIITCP SSLVKNWANE LVKWLGKDAI TPFILDGKSS KQELIMALQQ WASVHGRQVT 180
  181 RPVLIASYET LRSYVEHLNN AEIGMLLCDE GHRLKNSDSL TFTALDKLNV QRRVILSGTP 240
  241 IQNDLSEYFS LLNFANPGLL GSRQEFRKNY EIPILKGRDA DGTEKDKENG DAKLAELAKI 300
  301 VNRFIIRRTN DILSKYLPVK YEHVVFCNLS EFQLSLYKHF ITSPEINKIL RGTGSQPLKA 360
  361 IGLLKKICNH PDLLNLTEDL EGCEALFPPG FIPRELRGRD RNIDSSLSGK MLVLERMLYQ 420
  421 IKQETDDKIV LISNYTSTLD LFEQLCRARG YKALRLDGTM NVNKRQRLVD TFNDPEKDAF 480
  481 VFLLSSKAGG CGINLIGANR LILFDPDWNP AADQQALARV WRDGQKKDCF VYRFIATGTI 540
  541 EEKIFQRQSH KQSLSSCVVD EAQDVERHFS LDNLRQLFQL NDHTVCETHE TYKCKRCRDG 600
  601 KQFIRAPAML YGDTSTWNHF TNPTLDRIED HLLKREAGKQ QVSTVFQYKS H

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	97.39794
Match:	1z3iX
Description:	Structure of the SWI2/SNF2 chromatin remodeling domain of eukaryotic Rad54
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits